Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_I03
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    31   1.5  
U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    30   2.6  
AL008867-2|CAE17750.1|  763|Caenorhabditis elegans Hypothetical ...    29   6.0  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   7.9  

>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +1

Query: 769 PXXXXPXXXXSXPPXXXPPPXPSXPXPXXXPPFXXXXXP 885
           P    P      PP   PPP P  P P   PP      P
Sbjct: 56  PPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCP 94


>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 162 RNYDLGNGVMRFSKSKMFHKKAKYK 236
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>AL008867-2|CAE17750.1|  763|Caenorhabditis elegans Hypothetical
           protein C46E1.3 protein.
          Length = 763

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 799 SXPPXXXPPPXPSXPXPXXXP 861
           S PP   PPP PS P P   P
Sbjct: 79  SSPPRSSPPPPPSIPPPSDPP 99


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = -1

Query: 890 GXGXXXXXKGGXXXGXGXDGXGGGXXXGGXXXXXXGXXXXG 768
           G G     +GG   G G  G GGG   GG      G    G
Sbjct: 96  GGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGRGRG 136


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 805 PPXXXPPPXPSXPXPXXXPP 864
           PP   PPP P  P P   PP
Sbjct: 58  PPPMCPPPPPPPPPPMCPPP 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,282
Number of Sequences: 27780
Number of extensions: 284929
Number of successful extensions: 1082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)