Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H23
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    29   0.63 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.9  

>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 626 LFRSPSSSLDFNAGFKKFDTPFYRSSWEPNVGXXXXXXXXXVLCESSKIIIXFHILT*GF 805
           L  +P+SS+ ++      D   YR+ WE   G         +L  S   +  FH+L   F
Sbjct: 325 LCSAPTSSIAYHEEEINPDNTIYRAKWEEYFGGVILHNAFFILHVSLGEVPDFHLL---F 381

Query: 806 NYSLDIIMLRTXN 844
           + S D+ +L+  N
Sbjct: 382 HCSSDVRILQVVN 394


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 405 TPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFR 226
           TPS +    +  P  +S     L  ++  E ++S   SL S+DP+  STF SL    T  
Sbjct: 129 TPSSTESSSLLDPSSVSSA--ILPSSTSVEVSISS-SSLSSSDPLTSSTFSSLS-SSTSS 184

Query: 225 AAPEVPS 205
           + P V S
Sbjct: 185 SQPSVSS 191


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 402 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRS 292
           PS +  PG  VP  +S  P   S  S + A+LSL  S
Sbjct: 310 PSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,870
Number of Sequences: 5004
Number of extensions: 55268
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)