Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_H22
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0668 + 19737875-19738073,19738157-19738304,19738315-197384... 34 0.18
06_03_0041 + 15810231-15810614 30 2.9
01_05_0713 - 24548701-24549930 30 2.9
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42... 29 5.0
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 29 5.0
01_07_0338 - 42840890-42841006,42841101-42841136,42841226-428413... 29 5.0
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 6.6
01_03_0194 + 13645418-13645790,13645879-13647653 29 6.6
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 28 8.7
>10_08_0668 +
19737875-19738073,19738157-19738304,19738315-19738453,
19738521-19738664,19739502-19739561,19740058-19740190,
19740669-19740865
Length = 339
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 91 TLVTSTARMTSIDYTKVTIKEKEL-----YTPPXGRSSLCIVEWFNNELQVCGSVSGR 249
T V S R TSI +T+K ++L + PP S ++EWF +++Q G V R
Sbjct: 208 TSVVSEERKTSITGHSLTMKYRKLCIRGYWDPPEDISKYAMIEWFKSQMQEAGIVDLR 265
>06_03_0041 + 15810231-15810614
Length = 127
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 621 SFRATQSWSRRWAAVAGGSRCCPWALLT 538
S RA+ SW +RW + S PW+ LT
Sbjct: 7 SSRASTSWRQRWKGLPSSSTQRPWSRLT 34
>01_05_0713 - 24548701-24549930
Length = 409
Score = 29.9 bits (64), Expect = 2.9
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Frame = +2
Query: 410 PAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGTRIVS--------VHPVRSAQGQQR 565
P LAG G G + +R +D G ++ +HPV +
Sbjct: 23 PTALAGGGGGAVSVPFSRLGALARRQLRLAPLDAGRFLLRHPHAFHLFLHPVHRVLHARL 82
Query: 566 LPPATAAQRRDQDCVARKLPADGRETRKGN*SGREEPHGQVQLYHV 703
P A AA R + D VA LPA RK PH +++L H+
Sbjct: 83 TPRAAAALRLEADAVASSLPASIVRIRK--LLLLAPPHHRLRLEHI 126
>05_01_0061 -
422914-423027,423114-423149,423250-423324,423412-423465,
423554-423620,423912-424025,424114-424215,424220-424269,
424380-424424,424559-424642,424996-425100,425300-425443,
425535-425643,425738-425766
Length = 375
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 417 SSPALEPDRGRTWA*TAR 470
S P LEPDRG TW T R
Sbjct: 236 SQPGLEPDRGLTWQMTKR 253
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 260 LTEPPYYLKSPGL-TGDAKLVEIGGPPYLVPQVKRD 364
+ +PPY +++ G +G KL++ PY VP KRD
Sbjct: 324 ICDPPYGVRAGGRKSGGRKLIKGTVAPYTVPDEKRD 359
>01_07_0338 -
42840890-42841006,42841101-42841136,42841226-42841300,
42841380-42841433,42841703-42841769,42841844-42841900,
42842163-42842276,42842354-42842455,42842538-42842653,
42842892-42842975,42843429-42843533,42843732-42843875,
42843961-42844069,42844149-42844177
Length = 402
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 417 SSPALEPDRGRTWA*TAR 470
S P LEPDRG TW T R
Sbjct: 243 SQPGLEPDRGLTWQMTKR 260
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 351 CGTKYGGPPISTSLASPVNPGD 286
C ++GGPP +S+A PV G+
Sbjct: 200 CQVRWGGPPSKSSIADPVLTGE 221
>01_03_0194 + 13645418-13645790,13645879-13647653
Length = 715
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 338 YLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGT 517
Y+V V RDK Y+L LE ++ + AF A P +G+N I+ +V NG +
Sbjct: 71 YVVSYVGRDKYYNLFHGLECVD-NRAFCLLLWAALLPMVGMNTSSILT-AVHNGNEELPD 128
Query: 518 RIVS 529
I+S
Sbjct: 129 IIIS 132
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 594 ETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGA 761
E RT L G + E +PG+V+ V+ + +GKS ++ + L + V+ G A
Sbjct: 54 EERTILKG--ITGEARPGEVLAVLGPSGSGKSTLLSILGGRLAGRHAGTVLAGGRA 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,972,433
Number of Sequences: 37544
Number of extensions: 541932
Number of successful extensions: 1832
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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