Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H21
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   4.8  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   6.3  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    26   6.3  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   6.3  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 543 MPLISSTVGRTNRLKDT*RLLXSEDKIDPATAVAMFNVIFFQGAL 677
           +P +   +GR  RL    +LL   +  DP +  +M NV  ++G +
Sbjct: 369 LPALIRALGRAKRLNSCFQLLERYNLSDPTSDTSMTNVRSWEGLM 413


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -1

Query: 743  DDRFFIDVESFSSVSLALNGTCQCPLEENDVKHCNGRGGVNFVFAXQESLCVLESV 576
            D     ++    SV L ++ T  CP  E  + + +G    N   A Q +LC+++ +
Sbjct: 840  DQNLLNEINKTFSVVLKIHKTAFCPFWERLLPYMDGFLSGNDTVAKQWALCMMDDL 895


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 634 RPLQCLTSFSSRGHWHVPFNASE--TEEKDSTSMKKRSSRNRQ 756
           RPLQC+   S+ G   +P N  E     + + + KK  SR RQ
Sbjct: 50  RPLQCVFICSTTGQGEMPLNMRERIITYRFNWASKKLDSRLRQ 92


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 428 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSAPKNAADIINRWA 571
           T+  ++Y S  Y++ D  S+  +  R  + N+NF A KN +     WA
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA-KNYSS--KEWA 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,625,643
Number of Sequences: 5004
Number of extensions: 73182
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)