Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H20
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.30 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.8  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   8.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   8.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 607 DHMSHLVNWNAQSVGLL-HVLQTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPS 440
           D  S L++     + ++  ++   + L L +  D +  L    Y EY ++E+G++ S
Sbjct: 363 DQHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEYKMYELGELAS 419


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 247 FDFFFLCI-LFGCMGYFRFSRHIRFYNKSRNSS 152
           F  FFL I +F    Y   S  I +YN + N +
Sbjct: 431 FPLFFLAINVFYWFAYLSRSERINYYNVNSNGT 463


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 792 LYIRRSTGLDVAVXVAIP 845
           +Y++R  GL V V  AIP
Sbjct: 257 IYVKRFFGLPVGVTAAIP 274


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 792 LYIRRSTGLDVAVXVAIP 845
           +Y++R  GL V V  AIP
Sbjct: 257 IYVKRFFGLPVGVTAAIP 274


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 792 LYIRRSTGLDVAVXVAIP 845
           +Y++R  GL V V  AIP
Sbjct: 257 IYVKRFFGLPVGVTAAIP 274


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 269 EKTIEEI--LAADQEDESLRKYKEALLGQ 349
           ++T+++I  +  D EDE  ++Y E +L Q
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQ 69


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 269 EKTIEEI--LAADQEDESLRKYKEALLGQ 349
           ++T+++I  +  D EDE  ++Y E +L Q
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQ 69


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 422 HRAQPHTMLASSLSLCEDH 366
           H A  H +L  S  LCE H
Sbjct: 282 HHANHHAILGHSGFLCERH 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,055
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)