Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H19
         (941 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1121 + 34262019-34262040,34262144-34262211,34262909-342630...    32   0.76 
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819     29   7.1  
03_06_0087 - 31551825-31553363                                         28   9.4  

>02_05_1121 +
           34262019-34262040,34262144-34262211,34262909-34263067,
           34263146-34263313,34264125-34264278,34264845-34264924,
           34265567-34265839,34265956-34266099,34266750-34266884,
           34266994-34267092,34267530-34267586,34267673-34267877,
           34268159-34268277,34268779-34268877,34268964-34269203
          Length = 673

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 609 YGLFXAMSAIEMMDPKMXXG 668
           + LF AMSA+E+MDPKM  G
Sbjct: 20  FSLFGAMSALEIMDPKMDCG 39


>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
          Length = 451

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 192 FLSFISGPGSGGGANQRTAPQXDVAFTSRPVDLNDY 299
           +  F+ GP +G   N    P  DVA    PVD+ND+
Sbjct: 400 YTGFVPGPING---NYSYIPLEDVAVAKNPVDVNDH 432


>03_06_0087 - 31551825-31553363
          Length = 512

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 420 LFYYLSHKDSNMSDNNDEYYGDGXMEPLAAAPESDL-QLGRCNI*FL*IHNRSAVXRVTH 596
           LFY LSH+   +     E YGD     L    E+DL ++G+ +     +HN +A      
Sbjct: 165 LFYLLSHRRQQVIPKFREVYGD-----LFGLMENDLARVGKAD---FGVHNDAAAFGFLC 216

Query: 597 DGLLYGLFXAMSAIEMMDPKM 659
            GLL G   A SA+    PK+
Sbjct: 217 QGLL-GRDPAKSALGRDGPKL 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,343,816
Number of Sequences: 37544
Number of extensions: 312674
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)