Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H18
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.076
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.10 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.40 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    30   0.53 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 710 PPPPPPXGXGXPXGPPPXXXFXXXPPPXG 624
           PPPPPP G   P  PPP       PPP G
Sbjct: 10  PPPPPPPGFEPPSQPPP-------PPPPG 31



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 711 PTPPPPXXGWXPXGPPAP 658
           P PPPP  G+ P   P P
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 19/47 (40%), Positives = 19/47 (40%)
 Frame = +2

Query: 572 GGGGGVXXPPXGGVXXXPXXGGXPGXXXXGAGGPXGXXPXXGGGGVG 712
           GG GG    P G        GG PG    G GG  G  P   GGG G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG-FGGGPGGFGGGPG 266



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +2

Query: 557 PXPXXGGGGGVXXPPXGGVXXXPXXG--GXPGXXXXGAGGPXGXXPXXGGGGVG 712
           P P  GG GG       G       G  G PG    G GG  G  P   GGG+G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG-FGGGPGGFGGGLG 252



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +2

Query: 557 PXPXXGGGGGVXXPPXGGVXXXPXXGGXPGXXXXGAGGPXG 679
           P    GG GG    P G        GG PG    G GG  G
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +2

Query: 575 GGGGVXXPPXGGVXXXPXX-GGXPGXXXXGAGGPXGXXPXXGGGGVGF 715
           GG G      GG    P    G PG    G GG  G     GGG  GF
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF 261


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 707 PPPPPXGXGXPXGPPPXXXFXXXPPP 630
           PPP P   G P  PPP       PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 29.5 bits (63), Expect = 0.71
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -1

Query: 710 PPPPPPX--GXGXPXGPPP 660
           PPPPPP   G G P  PPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 710 PPPPPPXGXGXPXGPPPXXXFXXXPPP 630
           PPP P  G   P  PPP       PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 664 GGPXGXPXPXGGGGGGXXXXXPPP 735
           GGP   P P G  G G     PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 711 PTPPPPXXGWXPXGPPAPXXFXPGXPP 631
           P PPPP  G    GPP P    P  PP
Sbjct: 761 PPPPPPPPGVAGAGPPPP----PPPPP 783



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 710 PPPPPPXGXGXPXGPPPXXXFXXXPPP 630
           P PPP    G P  PPP        PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +2

Query: 572 GGGGGVXXPPXGGVXXXPXXGGXPGXXXXGAGGPXGXXPXXGGGGVG 712
           GGG G      GG+       G  G    G G P G     GGGG G
Sbjct: 136 GGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAG 182


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 706  PPPPLXGXGPXXAPRPXXXXPXXPPP 629
            PPPP+    P  AP      P  PPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 710 PPPPPPXGXGXPXGPPPXXXFXXXPPP 630
           PPPPPP        P P       PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 706  PPPPLXGXGPXXAPRPXXXXPXXPPP 629
            PP P    G    P+P    P  PPP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPP 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,176,286
Number of Sequences: 5004
Number of extensions: 14679
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)