Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H17
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   167   2e-42
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    54   3e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    54   3e-08
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.7  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   2.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   8.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  167 bits (406), Expect = 2e-42
 Identities = 83/174 (47%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
 Frame = +2

Query: 356 RRLYFXRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 535
           RR     RLKVPP I QF +TLDK TA  +FK+L KYRPET                   
Sbjct: 61  RRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGK 120

Query: 536 XXXXXXR-PNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 712
                 + P  ++ G N V  L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IV
Sbjct: 121 SAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIV 180

Query: 713 KGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWG 874
           K K+RLG ++H+KT   LA+T V   D+   + +V A+  NF+ +Y+E R+ WG
Sbjct: 181 KNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWG 234



 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 20/43 (46%), Positives = 31/43 (72%)
 Frame = +1

Query: 268 RTLPLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQXSSESAPS 396
           R+  + + IQP RDLSRFV+WP+YIR+QR++ +L    +  P+
Sbjct: 32  RSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPA 74



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 243 NPLFEKRPKNFAIGQ 287
           NPLF  RP++F IGQ
Sbjct: 24  NPLFVSRPRSFGIGQ 38


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +2

Query: 566 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 733
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 33/100 (33%), Positives = 47/100 (47%)
 Frame = +2

Query: 566 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 745
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG   +
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113

Query: 746 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 865
            K  T   +  V  G +   SKV E     + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = -3

Query: 541 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTXEVQ 362
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T ++ 
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTVDIP 256

Query: 361 PSGAGCGYTWA 329
                    WA
Sbjct: 257 MDRTHDNSIWA 267


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 307 DLSRFVRWPKYIRIQRQKAVLQXSSESAPSDQPIYPDTGQD 429
           D      WP Y R  R++++L  +S S P  QP Y     D
Sbjct: 105 DYGHSYEWP-YFRSLRRESMLYHTSGSYPESQPPYSSYSTD 144


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 587  LCLCRIGWC 561
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,360
Number of Sequences: 5004
Number of extensions: 55338
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)