Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H17
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   184   6e-47
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   173   2e-43
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    52   7e-07
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    52   7e-07
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    48   1e-05
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.038

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  184 bits (449), Expect = 6e-47
 Identities = 84/167 (50%), Positives = 113/167 (67%)
 Frame = +2

Query: 374 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXX 553
           +RLKVPP INQF   LD  +A+  FK+L+KYRPE+                         
Sbjct: 73  KRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTK 132

Query: 554 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 733
           RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG
Sbjct: 133 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192

Query: 734 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWG 874
            +V RKT   +AL +V   D+++ +K+VE +  NF+ER+EE+RKHWG
Sbjct: 193 TVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWG 239



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 21/43 (48%), Positives = 31/43 (72%)
 Frame = +1

Query: 268 RTLPLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQXSSESAPS 396
           R   + + IQP +D++RFV+WPKYIR+QRQ A+LQ   +  P+
Sbjct: 38  RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPT 80



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 243 NPLFEKRPKNFAIGQ 287
           NPLFEKR +NF IGQ
Sbjct: 30  NPLFEKRARNFNIGQ 44


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  173 bits (420), Expect = 2e-43
 Identities = 84/167 (50%), Positives = 113/167 (67%)
 Frame = +2

Query: 374 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXX 553
           +RLKVPP INQF   LD  +A+  FK+L+KYRPE+                         
Sbjct: 73  KRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVTK-------------------- 112

Query: 554 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 733
           RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172

Query: 734 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWG 874
            +V RKT   +AL +V   D+++ +K+VE +  NF+ER+EE+RKHWG
Sbjct: 173 TVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWG 219



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 21/43 (48%), Positives = 31/43 (72%)
 Frame = +1

Query: 268 RTLPLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQXSSESAPS 396
           R   + + IQP +D++RFV+WPKYIR+QRQ A+LQ   +  P+
Sbjct: 38  RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPT 80



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 243 NPLFEKRPKNFAIGQ 287
           NPLFEKR +NF IGQ
Sbjct: 30  NPLFEKRARNFNIGQ 44


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +2

Query: 566 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 739
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94

Query: 740 VHRKTCTCLALTNVESGDRASFSKVVEAIK 829
           V R         N  S  ++   K+ E ++
Sbjct: 95  VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 21/43 (48%), Positives = 31/43 (72%)
 Frame = +1

Query: 268 RTLPLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQXSSESAPS 396
           R   + + IQP +D++RFV+WPKYIR+QRQ A+LQ   +  P+
Sbjct: 141 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPT 183



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 243 NPLFEKRPKNFAIGQ 287
           NPLFEKR +NF IGQ
Sbjct: 133 NPLFEKRARNFNIGQ 147



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 374 RRLKVPPPINQFTQTLD 424
           +RLKVPP INQF   LD
Sbjct: 176 KRLKVPPTINQFRTALD 192


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 21/43 (48%), Positives = 31/43 (72%)
 Frame = +1

Query: 268 RTLPLVRXIQPTRDLSRFVRWPKYIRIQRQKAVLQXSSESAPS 396
           R   + + IQP +D++RFV+WPKYIR+QRQ A+LQ   +  P+
Sbjct: 141 RNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPT 183



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = +2

Query: 374 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 478
           +RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 176 KRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 243 NPLFEKRPKNFAIGQ 287
           NPLFEKR +NF IGQ
Sbjct: 133 NPLFEKRARNFNIGQ 147


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/89 (22%), Positives = 44/89 (49%)
 Frame = +2

Query: 563 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 742
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG  V
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 743 HRKTCTCLALTNVESGDRASFSKVVEAIK 829
             +  + L         +  + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 520 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 401
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,014,207
Number of Sequences: 27780
Number of extensions: 327538
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)