Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H16
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    27   4.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   6.3  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    26   8.4  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    26   8.4  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.4  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 637 NKTVSGDEAGAPGAFAPQSPRPPLVVGDVKRCPRAKKTATGSPKNRSSNESSDEELKVRV 816
           NK  +  EA      AP S    + +GD K C  A      + KN+   E+  + LK  +
Sbjct: 54  NKKKAEGEAMDLNHAAPLSHETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANI 113

Query: 817 KL 822
            +
Sbjct: 114 SI 115


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 437 RHQLQHVCSWHDISDSLRNQGHGRHHDILP 526
           + +   + S  +IS +L   GHGRH  +LP
Sbjct: 353 KEEFGDMVSDEEISKALAKYGHGRHGIVLP 382


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 386 VVPVESHVEVENHIPRLLAFLSAKVHGHLSCILLDFATY 270
           VV   S VEV +HI  L+   + +V G LS ++LD   Y
Sbjct: 336 VVEPFSRVEV-SHIAELIGLSTVQVEGKLSQMILDKIFY 373


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 422 RKRKLRHQLQHVCSWHDISDSL 487
           R+  L+  L+++CS HD++D L
Sbjct: 44  RQNLLKIDLKNICSLHDLTDQL 65


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 476 SDSLRNQGHGRHHDILPGGS 535
           +DS  NQ   RHH +LP GS
Sbjct: 3   NDSSDNQIRRRHHPVLPKGS 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,730,582
Number of Sequences: 5004
Number of extensions: 81308
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)