Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H16
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.6  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 733 PRAKKTATGSPKNRSSNESSDEELKVRVKLT 825
           P     A G P  R+  E++ +ELK R+K T
Sbjct: 530 PAKGAAAAGQPSKRNGGETNKQELK-RLKST 559


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = +3

Query: 369 RFHRDNIISLSRKNGIWIGSGNYDTNYNMFVPGTIFRI--VFEIKDTDVITIYCQGEVPF 542
           R     IIS    N  +    NY+ NYN +     + I  + +I     + +YC    P 
Sbjct: 75  RSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNINYIEQIPVPVPVPVYCGNFPPR 134

Query: 543 ELPP 554
            + P
Sbjct: 135 PMGP 138


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 476  KYRARNKHVVVGVVISASDPNAVLPGQ 396
            K ++  +HV+ G  + AS    V PGQ
Sbjct: 1006 KQQSPQQHVLPGKTLLASQIKLVSPGQ 1032


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,966
Number of Sequences: 438
Number of extensions: 6413
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)