Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H08
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.030
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.093
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +2

Query: 461 PPPPXGXGXXFXGPXPPPPKKXPXPXXXGGGXGFPPP 571
           PPPP   G    GP PPPP   P P    GG  +  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +2

Query: 455 KXPPPPXGXGXXFXGPXPPP-PKKXPXPXXXGGGXGFPPPXXG 580
           K PPPP         P P P P   P P    GG   PPP  G
Sbjct: 730 KSPPPPP---PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 464 PPPXGXGXXFXGPXPPPPKKXPXPXXXGGGXGFPPP 571
           PPP        GP PPPP     P   G G   PPP
Sbjct: 752 PPP---APIMGGPPPPPPP----PGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 578 PXXGGEXPXPPPXPXGXGXFWGGGXXAPKXXPPXPXGGG 462
           P  GG  P PPP         G G   P   PP    GG
Sbjct: 756 PIMGGPPPPPPPPGVA-----GAGPPPPPPPPPAVSAGG 789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = -3

Query: 570 GGGXPXPPPXXXGXGXFLGGGGXGPXXXXPXPXGGG 463
           GGG   PPP   G G F G GG G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -1

Query: 569 GGEXPXPPPXPXGXGXFWGGGXXAPKXXPPXPXGGG 462
           GG    PPP P G G F G G            GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/53 (37%), Positives = 20/53 (37%)
 Frame = -3

Query: 618 FXGXPXXXGXXXXPXXGGGXPXPPPXXXGXGXFLGGGGXGPXXXXPXPXGGGG 460
           F G P   G    P   GG P       G G  LGG G GP      P G GG
Sbjct: 226 FGGGPG--GFEGGPGGFGGGPG------GFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 461 PPPPXGXGXXFXGPXPPPP 517
           PPPP G       P PPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +2

Query: 500  PXPPPPKKXPXPXXXGGGXGFPPPXXGXXXXPXXXGXP 613
            P PPP +  P P    G    PPP           G P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.145    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,846
Number of Sequences: 5004
Number of extensions: 17980
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)