Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H04
         (1119 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    32   0.64 
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    32   0.64 
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    32   0.85 
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    32   0.85 
Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    30   2.6  

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 32.3 bits (70), Expect = 0.64
 Identities = 28/78 (35%), Positives = 30/78 (38%)
 Frame = +3

Query: 216 EELVQXAXXXEXAERYXXXXXXXXXXXXNXXXT*XXGRGTSFHVAYKNVVSXPXDHHGVS 395
           EELVQ A   E AERY                     R     VAYKNVV        V 
Sbjct: 6   EELVQRAKLAEQAERYDDMAAAMKKVTEQGQELSNEERNL-LSVAYKNVVGARRSSWRV- 63

Query: 396 FPQFEQKXEGSKGXQXMA 449
               EQK EGS+  Q +A
Sbjct: 64  ISSIEQKTEGSEKKQQLA 81


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 32.3 bits (70), Expect = 0.64
 Identities = 28/78 (35%), Positives = 30/78 (38%)
 Frame = +3

Query: 216 EELVQXAXXXEXAERYXXXXXXXXXXXXNXXXT*XXGRGTSFHVAYKNVVSXPXDHHGVS 395
           EELVQ A   E AERY                     R     VAYKNVV        V 
Sbjct: 6   EELVQRAKLAEQAERYDDMAAAMKKVTEQGQELSNEERNL-LSVAYKNVVGARRSSWRV- 63

Query: 396 FPQFEQKXEGSKGXQXMA 449
               EQK EGS+  Q +A
Sbjct: 64  ISSIEQKTEGSEKKQQLA 81


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 459  IFHLPXAVXPLNPRFSVQIEEMTRHDDPSXTIRHFYKQRERRFLCLXAKXDXXFRH 292
            IFHL       N  F+++ EE+    DP+ T+R   ++ E   + L A  D    H
Sbjct: 1491 IFHLAALKTYYNVLFNLRFEELPVSTDPTTTVRSIIRENEPFVIELPANCDRSLVH 1546


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 459  IFHLPXAVXPLNPRFSVQIEEMTRHDDPSXTIRHFYKQRERRFLCLXAKXDXXFRH 292
            IFHL       N  F+++ EE+    DP+ T+R   ++ E   + L A  D    H
Sbjct: 1491 IFHLAALKTYYNVLFNLRFEELPVSTDPTTTVRSIIRENEPFVIELPANCDRSLVH 1546


>Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical
           protein F52D10.3b protein.
          Length = 198

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 28/78 (35%), Positives = 29/78 (37%)
 Frame = +3

Query: 216 EELVQXAXXXEXAERYXXXXXXXXXXXXNXXXT*XXGRGTSFHVAYKNVVSXPXDHHGVS 395
           EELV  A   E AERY                     R     VAYKNVV        V 
Sbjct: 6   EELVNRAKLAEQAERYDDMAASMKKVTELGAELSNEERNL-LSVAYKNVVGARRSSWRV- 63

Query: 396 FPQFEQKXEGSKGXQXMA 449
               EQK EGS+  Q MA
Sbjct: 64  ISSIEQKTEGSEKKQQMA 81


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 28/78 (35%), Positives = 29/78 (37%)
 Frame = +3

Query: 216 EELVQXAXXXEXAERYXXXXXXXXXXXXNXXXT*XXGRGTSFHVAYKNVVSXPXDHHGVS 395
           EELV  A   E AERY                     R     VAYKNVV        V 
Sbjct: 6   EELVNRAKLAEQAERYDDMAASMKKVTELGAELSNEERNL-LSVAYKNVVGARRSSWRV- 63

Query: 396 FPQFEQKXEGSKGXQXMA 449
               EQK EGS+  Q MA
Sbjct: 64  ISSIEQKTEGSEKKQQMA 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,827
Number of Sequences: 27780
Number of extensions: 145199
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3015558362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)