Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H03
         (1193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.10 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
 Frame = +2

Query: 401 PPXXXXPPXXQXXXRGXXSPXXPXSXXXPTPHKIPFXXXXTXP-QTXLPRXXPPAXFPXK 577
           PP    PP  Q   R   S     S   P+P   P       P  + LP    PA  P K
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA-PVK 182

Query: 578 TPADPXSXPXXXPP 619
           +P    S P   PP
Sbjct: 183 SPPSAPSLPSAVPP 196


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 23/84 (27%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
 Frame = +2

Query: 395  TXPPXXXXPPXXQXXXRGXXSPXXPXSXXXPTPH---KIPFXXXXTX--PQTXLPRXXPP 559
            T  P    PP          SP  P +   P P    K P     +   P   +P   PP
Sbjct: 983  TSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPP 1042

Query: 560  AXFPXKTPADP--XSXPXXXPPPL 625
               P  TP  P   S     PPP+
Sbjct: 1043 VPIPTSTPPVPKSSSGAPSAPPPV 1066


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,500
Number of Sequences: 5004
Number of extensions: 25636
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)