Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_H01
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    26   8.0  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   8.0  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 652 PPKDYNPNGNGYEPIDNGAYYVDPSPRPTLLQAYPFP 762
           PP  Y+ +G+  +   + A Y   SP PT     P P
Sbjct: 153 PPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLP 189


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 282 FFFFNLTFSYDFNLK 238
           FFF NL F++D N+K
Sbjct: 8   FFFINLIFAHDLNVK 22


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
 Frame = +1

Query: 622 PIDNRPYIVNPPKD-----YNPNGNGYEPIDNGAYYVDPSPRPTLL 744
           P +N   +VN P       Y    N ++P     Y   PSP PTLL
Sbjct: 132 PYNNASMLVNEPFHDDSGVYYTRQNQFKPTLYNLYNPQPSPMPTLL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,943
Number of Sequences: 5004
Number of extensions: 52290
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)