Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G22
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.7  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 702 NDLVRSILLKHDFEKDASYFIALQYYALAPL 610
           +D+ R  LL +DF KD+S+ I   ++   PL
Sbjct: 328 SDVFRYGLLIYDFFKDSSFRIQHHFFYPDPL 358


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 295 TLGTNWPALRRMMPRKPTSRSSKVS*LPSASKNKRLNFQ 411
           +L   + ALR+++P  P+ + SK+  L  A++     FQ
Sbjct: 268 SLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQ 306


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 507 WRQKSLMCADDAKKRAYLYSTLDNENYH 424
           W QK L+  D  +K       LDN + H
Sbjct: 255 WHQKELVRRDSRRKNYGGVYHLDNHHVH 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,111
Number of Sequences: 438
Number of extensions: 4139
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)