Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_G21
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 32 0.69
11_06_0012 + 19251085-19251666 30 2.8
02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665 30 2.8
05_05_0354 - 24347550-24347870 29 3.7
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 3.7
01_06_0289 + 28233327-28233815 29 3.7
05_07_0203 + 28391707-28392165 29 6.4
03_02_0178 + 6195402-6199158,6199438-6200003 29 6.4
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.5
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 28 8.5
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 28 8.5
06_01_0817 - 6185881-6187074 28 8.5
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 31.9 bits (69), Expect = 0.69
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 546 RPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPD-PARLPDTCPPFSLREAWR 722
R P K ++ ++ + +G R+++ PPG +PVPD P P T R AWR
Sbjct: 62 RSPPPPSKKKKKKKKAADESG--RWKSVPPGMRESAAPVPDEPPASPCTTARRRARAAWR 119
>11_06_0012 + 19251085-19251666
Length = 193
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 727 RRRHASRREKGGQVSGKRAGSGTGE 653
RRRH RR+ GG G+ + G G+
Sbjct: 83 RRRHGGRRDSGGGAGGRGSRGGVGD 107
>02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665
Length = 244
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 724 RRHASRREKGGQVSGKRAGSGTGER 650
RR RRE+G ++G+R G+G ER
Sbjct: 36 RRRERRRERGEGIAGRRGGAGREER 60
>05_05_0354 - 24347550-24347870
Length = 106
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/78 (26%), Positives = 27/78 (34%)
Frame = -1
Query: 721 RHASRREKGGQVSGKRAGSGTGERTRELPGGNAWYLYSPVGXXXXXXXXXXX*CSSGGRS 542
R R KGG G + G G G R + G A + S G GR
Sbjct: 29 RGGGRGGKGGGGGGGKGGGGRGGAGRPIAGAAAAGIGSRAG--SGSHRHSAAAAGPHGRG 86
Query: 541 LWKNASNAAFLRFLAFCW 488
W+ + AA + A W
Sbjct: 87 AWRTSGGAAAVAAAALVW 104
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 591 WRNPTGL*RYQAFPPGSSLVRSPVPDPARLPDTCPPFSLREA 716
W P Y PPGSS+ P P P + T PP+ ++ A
Sbjct: 436 WGQPPPYASYPPPPPGSSMYNPPPPAPGQA--TPPPYGVQYA 475
>01_06_0289 + 28233327-28233815
Length = 162
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -1
Query: 730 ERRRHASRREKGGQVSG 680
ERRRHA RR KGG SG
Sbjct: 122 ERRRHARRRSKGGGGSG 138
>05_07_0203 + 28391707-28392165
Length = 152
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 730 ERRRHASRREKGGQVSGKRAGSGTGERTRE 641
E+R A + EKGG GK+AG G+++ E
Sbjct: 34 EKRLPAGKGEKGGAGEGKKAGRKKGKKSVE 63
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 573 RRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPDPARLP 683
RR S WR+ GL Y+A P S SP P RLP
Sbjct: 113 RRQSGGWRDSEGLDGYRAAPRRSG--ASPPTPPLRLP 147
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 303 NESAN---ARGEAVCVLGALPLPRSLTRCAR 386
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 566 QKSTLKSEVAKPDRTIKIPGV-SPWKLPRALSCSRPCPLTGY 688
Q L+ V P RT+ G + + P L+C PCPL Y
Sbjct: 158 QNINLQDAVNFPSRTLDCRGCCAGFFCPHGLTCMIPCPLGAY 199
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +1
Query: 523 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 663
CWR + T D Q + +KD P + PSC L+F
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIF 329
>06_01_0817 - 6185881-6187074
Length = 397
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 639 SSLVRSPVPDPARLPDTCPPFSLR 710
+++V SPVP P +P PPF+ +
Sbjct: 72 AAIVLSPVPQPLPVPPASPPFAFQ 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,602,619
Number of Sequences: 37544
Number of extensions: 516674
Number of successful extensions: 1804
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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