Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G21
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82064-2|CAI79180.1|  167|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   7.6  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   7.6  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   7.6  
AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z82064-2|CAI79180.1|  167|Caenorhabditis elegans Hypothetical
           protein W02B9.2 protein.
          Length = 167

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 728 EKAPRFPKGERRTGIR*AGRVGNRRAHEGASRG 630
           + AP FP+G    G R  GR G+R    G  RG
Sbjct: 71  DNAPDFPRGPDNNGGRGGGRGGDRGGDRGGDRG 103


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +3

Query: 540 RLRPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPDPAR 677
           R R P    + R+S QR R+P    R +  P  SS  RSP P P R
Sbjct: 480 RRRSPAAAPRRRQSPQRRRSP----RRRRSPSSSSRSRSPPPPPRR 521


>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 748 TYSVSYERRRHASRREKGGQVSGKRAGSGTGERTRELPGG 629
           T S   E  R     E+GG+  G+R G G G R R   GG
Sbjct: 162 TNSGGEETARDTDGGERGGRGGGRRGGRGRGGRGRGGRGG 201


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 479 SHVLSCVIXLILWITVLPPLSELIPLAA 396
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 479 SHVLSCVIXLILWITVLPPLSELIPLAA 396
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 479 SHVLSCVIXLILWITVLPPLSELIPLAA 396
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical
           protein F37B4.10 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 663 PDPARLPDTCPPFSLREAWRL 725
           P PARLPD CPP  + E  +L
Sbjct: 141 PVPARLPDFCPPARVPEHLQL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,491
Number of Sequences: 27780
Number of extensions: 378114
Number of successful extensions: 1096
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)