Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G20
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.84 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.9  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    27   3.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 787 PPXPGGXGGFFXXKKXXPPPPPRXXKKK 704
           PP P    GF    +  PPPPP   KK+
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -2

Query: 841 GXXGFXGGEXGXGXXKKXPPXPGGXGGF 758
           G  GF GG  G       PP PGG GGF
Sbjct: 189 GFGGFGGGSGGP------PPGPGGFGGF 210


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 182 NVHLSGIFSLENVVR*RNRQLPQ 114
           N+H+SGI +LENV+  +  QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,508
Number of Sequences: 5004
Number of extensions: 44120
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)