Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G19
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    58   1e-08
U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    28   7.7  

>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
 Frame = +2

Query: 728 REFDRRSGSDKTGVKSVDKREGAGPHNWGTXKDDL-DELNKTGSEG-ETTE 874
           R+FDR+SGSD+TGV+S DK++G G  NWG  KD+L  E      EG E+TE
Sbjct: 178 RQFDRQSGSDRTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTE 228


>U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical
           protein T12C9.7 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = -2

Query: 857 QNRFCSTRRDRPXSCPSCGDLRPPSCRLISHRFCQSRIFGRTHVCLYC 714
           + + C+ +R  P   P+C +L+P   ++        +  G +++  YC
Sbjct: 49  EKKQCTKKRQLPSLAPACEELQPKKSKVTEETVASQKTHGLSNLDDYC 96


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
            protein Y73F8A.5 protein.
          Length = 1019

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 504  RVVVKIGRRTVPQKTRKELRGHRDASSA 587
            RV+   GRR+ P  +R  LR HR+  +A
Sbjct: 983  RVIFSKGRRSAPNNSRTTLRDHRENDNA 1010


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 816 VPQLWGPAPSLLSTDFTPVLSEP-DLRSNSRLPLLS 712
           +P  WGP+ S L TD     S+P     N+ LP LS
Sbjct: 168 IPNAWGPSKSALVTDDVASTSDPLPAIFNAHLPPLS 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,785,623
Number of Sequences: 27780
Number of extensions: 303778
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)