Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G16
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    53   6e-08
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    29   1.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   8.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   8.3  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = +1

Query: 217 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 351
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VVV+R
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSR 55



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 329 AITLSSPGXKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 502
           ++ +S  G  +K+A+ A I FS                  DWLRVV++    YELRY+
Sbjct: 50  SVVVSREG-SSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 201 LDAFAADFATLHSFFASLLVQLGFLS 124
           +D +  DFAT H+ + + L  +GFLS
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 262  DVGNFEKYLKEHVKVEGKTNNLSNHVVVARX*DESRYHRRHSFFKEVPE 408
            + GN +KY + ++KV GK ++   H       ++S+    +  F +V +
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTHHTPGAFPNDSKNKELNRHFLKVDD 1003


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 34  FLKILHFCSFYGNLLYTCSFATM 102
           F ++   CSF+  LLY+  FAT+
Sbjct: 18  FFRLFFVCSFFFPLLYSFIFATL 40


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 217 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 327
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,723
Number of Sequences: 5004
Number of extensions: 50631
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)