Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G16
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1662 + 28447419-28447666,28448429-28448573                       50   2e-06
03_02_0963 - 12769715-12769859,12770639-12770889                       48   1e-05
09_02_0195 + 5643549-5645090                                           31   1.6  
06_01_0438 + 3110703-3111945,3112486-3113057                           29   6.6  

>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +1

Query: 211 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVAR 351
           ++ F IDC+ P ED I+++ + EK+L+E +KV  GK  NL + V V R
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTR 67



 Score = 37.5 bits (83), Expect = 0.014
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 356 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 502
           KTKV +T+D  FS                  DWLRV+A+  D   YELRYF
Sbjct: 69  KTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +1

Query: 211 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVAR 351
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  NL   V V+R
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSR 68



 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 356 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 502
           KTKV +T+D PFS                  DWLRV+AS  D   YELRYF
Sbjct: 70  KTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120


>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 182 ILPPFTPFLPVFWCNWAFLAT 120
           ILPP  P LP+ W +W  LAT
Sbjct: 152 ILPPSNPTLPMQWIDWEALAT 172


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 714 HCILVVVCPNSSMYLIMSGSN*PSTKGRSAAAVP 613
           HC + +VC +S+  L++S    P+    ++AA+P
Sbjct: 64  HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,706,090
Number of Sequences: 37544
Number of extensions: 337008
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)