Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G16
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    47   2e-05
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +1

Query: 211 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL-SNHVVV 345
           +LKF ++C +P ED IL + + E +L E +KV GKT +L +N+V V
Sbjct: 20  HLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKV 65



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 356 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 502
           K+KV++ +++PFS                  DWLRVVA   + YE+RYF
Sbjct: 69  KSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYF 117


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 748 YCFICNHYKLHKQXXNNXAFIYVSGSG-GGVEVFL 849
           Y  IC +   H Q  NN AFI  S  G  G  +FL
Sbjct: 252 YIMICCYLNYHNQSANNFAFICFSCHGVSGASIFL 286


>Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical
           protein T09E11.5 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 179 LPPFTPFLPVFWCNWAFLATGFFVTAIVAN 90
           L  F  FL     ++AF+ T FF T +VAN
Sbjct: 410 LKEFVDFLEASQPDYAFILTRFFATGVVAN 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,932,705
Number of Sequences: 27780
Number of extensions: 301726
Number of successful extensions: 668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)