Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G15
         (1076 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    73   5e-14
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    73   5e-14
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    26   7.9  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 73.3 bits (172), Expect = 5e-14
 Identities = 46/107 (42%), Positives = 58/107 (54%)
 Frame = +2

Query: 146 VTSEXHDTWRPETPGPQPPSPCNVRPWXKNGFVYAEGSLHVKIVEMYTSXIGKHGHAXVH 325
           +  E H  +     G     P       KNG V  +G    KIV+M TS  GKHGHA VH
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGR-PCKIVDMSTSKTGKHGHAKVH 59

Query: 326 LVGIDIXNGKKYEDICPSXXLMDVXHVQXRXLPX*PDISDDGYLSLL 466
           +V +DI NG+KYED+ PS   MDV  V+ R      +I DDGYL+L+
Sbjct: 60  IVALDIFNGRKYEDMSPSTHNMDVPVVK-RDEYQLVNI-DDGYLNLM 104


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 73.3 bits (172), Expect = 5e-14
 Identities = 46/107 (42%), Positives = 58/107 (54%)
 Frame = +2

Query: 146 VTSEXHDTWRPETPGPQPPSPCNVRPWXKNGFVYAEGSLHVKIVEMYTSXIGKHGHAXVH 325
           +  E H  +     G     P       KNG V  +G    KIV+M TS  GKHGHA VH
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGR-PCKIVDMSTSKTGKHGHAKVH 59

Query: 326 LVGIDIXNGKKYEDICPSXXLMDVXHVQXRXLPX*PDISDDGYLSLL 466
           +V +DI NG+KYED+ PS   MDV  V+ R      +I DDGYL+L+
Sbjct: 60  IVALDIFNGRKYEDMSPSTHNMDVPVVK-RDEYQLVNI-DDGYLNLM 104


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 221 PWXKNGFVYAEGSLHVKIVEMYTSXIGKHGH 313
           PW + G  Y + S+++ IVE     I   G+
Sbjct: 167 PWRRAGIKYRKNSIYIDIVERMNLLISSTGN 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,637
Number of Sequences: 5004
Number of extensions: 31343
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)