Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G13
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    33   0.053
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    30   0.50 
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    27   3.5  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   4.6  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   6.1  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    26   6.1  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   6.1  
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s...    26   8.1  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = +2

Query: 395  EAARCLKCADAPCQK--SCPTQIDVKSFITSIANKNYYGAAKAILSDNPLGLTCGMVCPT 568
            + ARC+ C    CQ    CP    + ++   +  + +  A   +L  N      G VCP 
Sbjct: 1652 QTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFKQQWKEALTQLLLTNNFPEFTGRVCPA 1711

Query: 569  SDLCVGGCNLHATEEGAINIGGLQHFAVD 655
               C G C L    E  + I  ++   +D
Sbjct: 1712 P--CEGACTL-GIIESPVGIKSVERAIID 1737


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 155 KSISNIMAKLLSKELPDIENLLKLNPTVKPYTNLVPSAQTK 277
           KS   I+AKLL++     +N LKLN T+K     +  A+TK
Sbjct: 39  KSKDEIIAKLLTEGQALSKNELKLNNTIKQLKKSLSEAETK 79


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
 Frame = +2

Query: 227 NPTVKPYTNLVPSAQTKKIKQHWKRNADRKCTTCPTLNKNFDDIKHTTLSERGALREAAR 406
           N +V    N   S +T   K HWK ++D    + P+ +  F           G       
Sbjct: 129 NSSVATSLNYQSSRETGISKDHWKPDSDVSVCSFPSCSVRF-----------GLFDRRHH 177

Query: 407 CLKCADAPCQKSC----PTQIDVK 466
           C +C D  C   C    P  +DVK
Sbjct: 178 CRRCGDIFCALHCDRNIPLTMDVK 201


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 720 GDHKIALIGGGPASISCACFLARLGYKDI 806
           G++ + +IGGGP     A   A+LG K I
Sbjct: 44  GEYDLCVIGGGPGGYVAAIRGAQLGLKTI 72


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +2

Query: 95  RNKYSYTRRYFISDCKTDFFKSISNIMAKLLSKELPDIENLLKLNPTVK 241
           R+ Y+Y     I+   TDF   I NI  K     L D + L   N T K
Sbjct: 615 RDSYTYEELAKITGLSTDFLTGILNIFLKAKVLLLGDNDKLGDPNSTYK 663


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 726 HKIALIGGGPASISCACFLAR 788
           +K+ +IG GPA  + A +LAR
Sbjct: 4   NKVVIIGSGPAGHTAAIYLAR 24


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 732 IALIGGGPASISCACFLARL 791
           IA+ GGG A +S A +LARL
Sbjct: 3   IAICGGGIAGLSTAFYLARL 22


>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
           subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 127 KISSCIRILIPCRRSGLLTGSATQRLKIL 41
           ++ + +  LIP  RS + TG+A Q LK L
Sbjct: 31  QVQAAVSQLIPQARSAIQTGNALQGLKTL 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,592,807
Number of Sequences: 5004
Number of extensions: 76137
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)