Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G12
         (1057 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       30   3.5  
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331...    25   4.3  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
 Frame = -2

Query: 732 PPXPLPWXXPLFXGPXXX----PXFXXVXXXXPFXPXXPPXPPPLXGLSXFXPFP 580
           PP P P   P F  P       P F  +    P  P  PP PPP    S   PFP
Sbjct: 286 PPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPP-PPPSFPWPFP 339



 Score = 29.1 bits (62), Expect = 6.2
 Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = -2

Query: 732 PPXPLPWXXP-LFXGPXXXPXFXXVXXXXPFXPXXPPXPPPLXGLSXFXPFP 580
           P  P PW  P  F  P   P F       P  P  P   P L  L  F P P
Sbjct: 263 PLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLP 314


>03_05_0732 -
           27232299-27232535,27232717-27232746,27233094-27233155,
           27233975-27234005,27234618-27234713,27234881-27234969,
           27235687-27236263
          Length = 373

 Score = 24.6 bits (51), Expect(2) = 4.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 630 PPXPPPLXGLSXFXPF 583
           PP PPP  G   F PF
Sbjct: 81  PPPPPPPMGAPGFGPF 96



 Score = 23.4 bits (48), Expect(2) = 4.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 648 PFXPXXPPXPPPL 610
           P  P  PP PPPL
Sbjct: 51  PHQPPPPPPPPPL 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,947,452
Number of Sequences: 37544
Number of extensions: 159702
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3129488528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)