Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G07
         (1018 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    28   2.4  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    28   2.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.2  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    27   4.2  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   9.8  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    26   9.8  

>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 252 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAE---EEARQLQKXIQTIEXELDQ 416
           ++K ++ K+E+  +  R    E Q+K  NLR +  E   ++ R LQ+ I  +E +L Q
Sbjct: 17  QQKRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEADLSQ 74


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 148 KKLLEELESHHST--RRLDIFSSKGAEKTKPPK 240
           ++LLEE+ S HST     D  ++ G E  KPPK
Sbjct: 72  EQLLEEVSSQHSTDAAASDSNTNFGTENPKPPK 104


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/60 (21%), Positives = 31/60 (51%)
 Frame = +3

Query: 237  KMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKXIQTIEXELDQ 416
            K++ +  ++  +KLE+ NA +         KD + +  + +EE   +   I ++E ++D+
Sbjct: 3323 KLEPLNSEVDRLKLEQKNAEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQMDE 3382


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 222 KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDAN---LRAEKAEEEARQLQKXIQ 392
           K   T  + + K +  +K  ++  L+   + EQ+  +AN   L+ E+ E +     + I 
Sbjct: 54  KQSATDSELLHKNLDEIKFLQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEIN 113

Query: 393 TIEXEL 410
           ++  +L
Sbjct: 114 SLNSQL 119


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/65 (20%), Positives = 31/65 (47%)
 Frame = +3

Query: 222 KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKXIQTIE 401
           ++K  ++  +  +   +  E D++ +    C  QAK    +  +A  ++++    +QTI 
Sbjct: 185 RSKDEQVKELNARNAKLLEELDSSEEACKSCYTQAKTWEKKFREALRDSKEYAAQLQTIH 244

Query: 402 XELDQ 416
            E +Q
Sbjct: 245 EEYEQ 249


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 252 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQ 374
           KK   A K  KDN   +A +  QQ ++ NL+  +  +++++
Sbjct: 181 KKSSDAWKERKDNE-KKAMLMRQQRREENLKKRRESKKSKK 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,312
Number of Sequences: 5004
Number of extensions: 33160
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)