Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_G01
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   228   9e-61
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   1.5  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.6  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    26   8.0  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   8.0  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    26   8.0  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   8.0  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  228 bits (557), Expect = 9e-61
 Identities = 100/157 (63%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
 Frame = +1

Query: 331 RIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVR 510
           RIPERVVHAKG+GAFG FE T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT R
Sbjct: 53  RIPERVVHAKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTAR 112

Query: 511 DPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDLLT 690
           DPRGFA+KFYTD+G++D+VGNNTP+FF+RDP  FP FIHTQKRNP   +KD  MFWD L+
Sbjct: 113 DPRGFALKFYTDEGIFDMVGNNTPVFFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLS 172

Query: 691 LRPETIHQLLYLFGD-RGIPDGYRHMNGYGSHTFKLV 798
              E+IHQ++ LF D  G P  YR M+G+ SHT+K V
Sbjct: 173 QNAESIHQVMILFSDLGGTPYSYRFMDGFSSHTYKFV 209



 Score = 35.5 bits (78), Expect = 0.010
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 219 SGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 326
           +G P+    A   VGK GP LLQD + +D    FDR
Sbjct: 16  TGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDR 51


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 589 FIRDPTLFPSFIHTQKRNPATHLKDP 666
           +++DPTL P F+HT  R   T   +P
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQTDNDNP 531


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 529 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 404
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 152 LGLLKPFCMFPSYYAAFVV*YHGATHW 72
           LG+ +PF ++ +Y    V  YH  + W
Sbjct: 334 LGISRPFMVYSTYQQVLVETYHQLSKW 360


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 286 RMLTFLMKCHPLTGXRIPERVVH 354
           + +TFL+   P  G RIP   VH
Sbjct: 123 KTVTFLLTAQPYNGPRIPNASVH 145


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +2

Query: 23  YREFLKILGNLSSRYAPSESLRGIKQRTPHSKKGTYKMASRDPA----TDQLIN-YKKTL 187
           YR+ LKI+G  S   +  ES   +K      + G YK+ ++  A    TD+ IN Y+K +
Sbjct: 252 YRKNLKIIGCNSLLLSLVESNSLLKNMVAKFEAGKYKVLNKKIAETSLTDECINSYRKLM 311

Query: 188 KD 193
            +
Sbjct: 312 NE 313


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 503 VSADPLSPPTVENLTAIGVLLPMDSNTL 420
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,646,440
Number of Sequences: 5004
Number of extensions: 80313
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)