Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_F24
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.51 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.8  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    26   6.3  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.3  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
 Frame = +3

Query: 408 GVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGVDYMFKQKVGASLSAAHS 587
           G A +V +   + H   A   +  +SP   PNA   N    G   + +  +   LS+  S
Sbjct: 409 GEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLSS--S 466

Query: 588 DVINRNDYSAGGKLNLF---RSPSSSLDFNAGSRSL-----IRLFTDLRGSP 719
            + +   +S+GG  + F   R P+ S+      RSL      + F+D+R  P
Sbjct: 467 GLFDNGLFSSGGLSSNFSSLRRPAPSMHLADSIRSLRGLNDSKAFSDIRSMP 518


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 412 TPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFR 233
           TPS +    +  P  +S     L  ++  E ++S   SL S+DP+  STF SL    T  
Sbjct: 129 TPSSTESSSLLDPSSVSSA--ILPSSTSVEVSISS-SSLSSSDPLTSSTFSSLS-SSTSS 184

Query: 232 AAPEVPS 212
           + P V S
Sbjct: 185 SQPSVSS 191


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 552 QKVGASLSAAHSDVIN-RNDYSAGGKLNLFRSPSSSLDFNAGSRSLIRLFTDLRGSPMWD 728
           Q +  +L+A   +++  R    AG  +NL + P+S++      ++L R       +P + 
Sbjct: 281 QAIAPNLTALVGELVGARLIAHAGSLMNLAKQPASTIQILGAEKALFRALKTKHSTPKYG 340

Query: 729 XLLEIXLKVYAKAVN 773
            +    L   A + N
Sbjct: 341 LIYHASLVGQANSKN 355


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 409 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRS 299
           PS +  PG  VP  +S  P   S  S + A+LSL  S
Sbjct: 310 PSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,330
Number of Sequences: 5004
Number of extensions: 55396
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)