Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_F22
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658...    29   3.7  
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678...    29   6.5  
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665     28   8.6  

>01_06_1815 -
           40064351-40064887,40064987-40065634,40065834-40065890,
           40065921-40065941,40066714-40066941
          Length = 496

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 630 TWWLPNSYTNQAMNFYLIDPHLVA 701
           +WW+PNS +N +  F  +  H++A
Sbjct: 322 SWWMPNSVSNFSSGFLFLRCHVIA 345


>09_06_0177 +
           21365314-21366100,21367451-21367578,21367715-21367870,
           21368006-21368196,21369392-21369434,21369537-21369627,
           21369859-21369935,21370278-21370366,21370474-21370657,
           21370885-21371138,21371465-21371567,21371646-21371977,
           21372060-21372504
          Length = 959

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 146 CTENESGPFVVFFLPAIVGCLTILLARRWANSQVS 250
           C  ++    V+ FLPA     T LL+RRW N  VS
Sbjct: 24  CLPDDLVHHVLSFLPAPDAACTSLLSRRWRNLWVS 58


>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
          Length = 727

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 348 LERKRPQGTNNKKCTYPVEDDVSG-GKRVGRQTRVTPN 458
           LE +   G N K  T   E +VS  G RVGR+ + +PN
Sbjct: 153 LESESSVGPNGKASTEEGEAEVSKPGSRVGRRRKASPN 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,495,950
Number of Sequences: 37544
Number of extensions: 449785
Number of successful extensions: 1000
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)