Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_F18
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   2.8  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   4.9  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   4.9  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    26   8.5  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 357 PRSSLKNXPVVTTFTKKSLVALSQSPEDLPSPHFLVPSDK 238
           P+S   + P   + T+KS V      +++ S HF VP  K
Sbjct: 442 PKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHFSVPEFK 481


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 97  VFQGCCYPAALLVCVNAQVSM 159
           + QGC  PA L++ VNAQV +
Sbjct: 578 LLQGCMAPATLVLKVNAQVML 598


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 693 RQECLSKRHLYSCFDNG 643
           R  C +K HL +C DNG
Sbjct: 83  RDMCFTKNHLLACHDNG 99


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 342 KNXPVVTTFTKKSLVALSQSPEDLPSPHF 256
           KN PVV  FT+ +L  +   PED+    F
Sbjct: 53  KNQPVVGFFTEDALKMVGTKPEDVMQVSF 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,331
Number of Sequences: 5004
Number of extensions: 62959
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)