Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_F18
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical
           protein C38D9.8 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 25  HYXGNSLRXLTFLSRAAKPVTIQNVFQGCCYPAALLVCVNAQVSMPPGYAEKYPITSQFS 204
           H   N L+ L   +   + +TI++ ++G   P  +L  +NAQ   P    +K+ + S  S
Sbjct: 207 HTIRNFLQVLKKSNSQLEVLTIRDSWEGSWDPIVVLEGLNAQEWSPEHRPQKFSLKSSHS 266

Query: 205 KSV 213
           KS+
Sbjct: 267 KSL 269


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 780 YRTQINSYKSIDFYNNFFRQNFIHTSR 700
           ++ QI  Y  I F +  FRQN +HT++
Sbjct: 59  FKMQIRQYVMIPFNSPIFRQNQLHTTK 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,680,681
Number of Sequences: 27780
Number of extensions: 364595
Number of successful extensions: 860
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)