Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_F13
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +3

Query: 729  SPPXSPXXXRPPXSPPKXPXXXPFXPXP 812
            +PP  P    PP S P  P   P  P P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 506 RLPQAERPGPPXXCPXNPGGXPIPXTXFPRALAP 405
           R+P    P PP   P + G    P    PR +AP
Sbjct: 244 RVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = +3

Query: 684 PXGGXPXRTXXIPGVSPPXSPXXXRPPXSPPKXPXXXPFXPXPXXXNGXTFPXXPP 851
           P  G   RT   P  +PP  P    PP  PP  P   P           + P  PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSA-PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,133
Number of Sequences: 5004
Number of extensions: 13566
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)