Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_F11
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 33 0.40
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 31 0.93
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 31 1.2
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 3.7
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 29 3.7
01_06_0494 - 29778423-29778647,29778758-29779150 29 3.7
03_02_0744 + 10880496-10880891 29 4.9
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 29 6.5
07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084... 29 6.5
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 28 8.6
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 32.7 bits (71), Expect = 0.40
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2
Query: 590 PFGTDGAKHRSGQTGQAPAYCLGYTHCSEVDHWDGDANLIKLI 462
P G + HR G+TG+A A + YT SE D W +L+K++
Sbjct: 926 PTGIEDYVHRIGRTGRAGATGVSYTFFSEQD-WKYAGDLVKVL 967
>06_03_1306 + 29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 31.5 bits (68), Expect = 0.93
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +1
Query: 262 IFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGVDTNCP-- 435
+F WA +++ + +E DN WSAA K T ++ + NCP
Sbjct: 921 MFSSPEWASSDLASRSSFRHVYEVVKTDNAFWSAAADILKLTDPLITVLYKLEADNCPIG 980
Query: 436 -AYDIIHCA 459
YD + CA
Sbjct: 981 ILYDAMDCA 989
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +1
Query: 190 PKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAV 369
PKI QP + +KP++ T K G ++ D+K ++ +F+K + SA++
Sbjct: 179 PKIEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLA---ARFSKVTGNASASI 235
Query: 370 QNFKTTCLSDSLK 408
+ K LS S+K
Sbjct: 236 SSSKDKVLSASIK 248
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 634 MITVCGAGRGTRYTNHSVLMGRS-TVQGRRDRRPRT 530
M TV A R +Y N SV+ GR+ TV+ R RPRT
Sbjct: 155 MDTVEDAERCIKYLNQSVMEGRNITVEKSRRGRPRT 190
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +2
Query: 467 ALSNSHLRPNGRLRSSACIRGSTRAPVPSALNGASPHQYRMVRVTRASPCPAHRDHVQTS 646
AL NS PNG +++ C+ G+ + S+L Q+ + VT+ + CP + H +
Sbjct: 895 ALFNS---PNGAHKAAQCVEGNHTLKLTSSL--TDTQQFGLENVTQET-CPGY-IHGECG 947
Query: 647 EHLSEQCINAAINF 688
SE+ +N + F
Sbjct: 948 TSTSERSLNNIVGF 961
>01_06_0494 - 29778423-29778647,29778758-29779150
Length = 205
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 84 VFITH---RCRGIK-RQHPRTASSLLRRIAKHDILVSWQP*DNSTRSIGKM 224
VF+ H R RG+ R HPR SLL +A I + +P D+ + + K+
Sbjct: 91 VFVFHPASRTRGVAIRFHPRNGRSLLTYVAGSTIFLDGEPKDSLLKPVTKV 141
>03_02_0744 + 10880496-10880891
Length = 131
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 241 ECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPD 354
EC +E A ++ D+KK SD E++ KDNP+
Sbjct: 85 ECAAAWDEVEELSAAASHARDRKKDSDPLEEYCKDNPE 122
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 514 CVYPRQYAGACPVCPERCFAPSVPNGSCNA 603
CV+ + C CP APS PNG+C++
Sbjct: 381 CVFGLPWLAPCRPCPT-AGAPSPPNGTCHS 409
>07_03_0741 -
21107566-21107838,21107964-21108102,21108189-21108426,
21108629-21108836,21108945-21109066,21109146-21109271,
21109356-21109774,21109844-21110268
Length = 649
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 469 FIKFASPSQWSTSEQCVYPRQYAGACPV 552
F+ F SP QW S+ YP Q + + V
Sbjct: 127 FMDFLSPDQWQVSQMIWYPEQASASVDV 154
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Frame = +2
Query: 476 NSHLRPNGRLRSSACIRGSTRAP----VPSA----LNGASPHQYRMVRVTRASPCPAHRD 631
N H P + S CI + VP A +NG PH YR+ + P P H +
Sbjct: 332 NGHRMPENPITPSHCIERAALKEHLNHVPHAKAAVMNGQMPHSYRLAQ-NPILP-PNHIE 389
Query: 632 HVQTSEHLSE 661
Q E+LSE
Sbjct: 390 GYQVMENLSE 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,714,042
Number of Sequences: 37544
Number of extensions: 468895
Number of successful extensions: 1398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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