Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_F02
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    31   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.65 
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    27   3.5  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   4.6  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    26   6.0  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    26   6.0  
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    26   6.0  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -3

Query: 821 TAQPWEGAPSTAVAGDN--LAEIHHVEGVLLHPALHDLPGSR*PGTTIPPSL*CVVPPQP 648
           T+ PW+   + A AG    LA   + +  ++  A+H L  +  PG  I  ++  + P   
Sbjct: 590 TSVPWQFCSAIAKAGFTYELAGGGYFDPKMMREAIHKLSLNIPPGAGICVNVIYINPRTY 649

Query: 647 SWCYPTLRGLVSLVYP 600
           +W  P +R +V+  YP
Sbjct: 650 AWQIPLIRDMVAEGYP 665


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 356 THSPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 454
           T +PP          P+R P+L+AP   P+ PP
Sbjct: 227 TSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +2

Query: 680 EGSWSPVSVIREDRGERGAGGPLLRDGSRRGCRPLQQWKELLPRVEP 820
           EG+WS +     + GE      L  +G+     P   W  +L R+ P
Sbjct: 257 EGAWSEIKAWEREAGENTEPKLLRFEGNANKRTPRALWYMMLGRINP 303


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +2

Query: 569 VDRGAGPRRARDKLRKQVHVKLDNTMKVVEEQR--IRVMEGSWSPVSVIREDRGERGAGG 742
           ++R  GP     + +    V   N  K +   R  ++V EG+   ++V+ ED G++    
Sbjct: 94  LNRSNGPAVWSPRAQMDRSVFKKNMQKTISTYRKNLQVREGAAVSINVLTEDDGKQVCDS 153

Query: 743 PLLRDGS 763
            +L DG+
Sbjct: 154 IVLEDGT 160


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  WRSIRKSVIGRFLSIPTLFVSFLRNASGFS 140
           W S+  + +  + +  TLFVS L+NA   S
Sbjct: 7   WYSLLLTEVAAYFTSTTLFVSILKNAPSLS 36


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 60  IRKSVIGRFLSIPTLFVSFLRNASG 134
           ++K  +   ++  TLFVSFL +ASG
Sbjct: 36  VQKEALKAMINSATLFVSFLTSASG 60


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 110 HEKSWDRKETTDDRFAYATPSQNLKGFPIV 21
           H K+W  K    D F + TP  N  G+P +
Sbjct: 76  HTKAWGSKIAGADGFVFVTPQYN-GGYPAI 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,522,174
Number of Sequences: 5004
Number of extensions: 71745
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)