Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_F02
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 31 1.6
06_02_0280 - 13708651-13708839,13708895-13709164,13709889-137104... 31 1.6
01_05_0175 - 18936752-18937621,18938855-18941641 31 1.6
09_02_0543 + 10427321-10428315,10428440-10429154 29 3.6
03_05_0633 + 26276454-26277368 29 3.6
02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608 29 3.6
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 29 4.8
06_01_0170 - 1352865-1353422,1355049-1355327 29 6.4
05_07_0100 + 27679280-27680320 29 6.4
04_01_0200 + 2400929-2402161 29 6.4
07_01_0040 + 325737-328181 28 8.4
04_03_1022 - 21778315-21779007 28 8.4
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 261 KIPPSTESLPSGWLILGAPGESGACGSAGRNG-RTARPRPSPR 386
+ P ST L + A SG G +G RTARP P+PR
Sbjct: 14 RCPRSTAVLAASRFAASASSSSGGGGGGSSSGARTARPPPAPR 56
>06_02_0280 -
13708651-13708839,13708895-13709164,13709889-13710476,
13710511-13710686,13710897-13711029,13711193-13711462,
13711521-13711889
Length = 664
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +3
Query: 177 GKVFHGKTRETKSLIVGQFFCAKCN*TTKIPPSTESLPSGWL-ILGAPGESGACGSAGRN 353
G F KTR ++ + AK + K+ + P G + L + CGS G +
Sbjct: 116 GGAFFSKTRGMHTVKETEMLAAKLDLLMKLLDDHDKRPQGTIKALDSDVTCEVCGSTGHS 175
Query: 354 GRTARPRPSPRC 389
G TA+ RC
Sbjct: 176 GMTAQKPVKRRC 187
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 332 VWQCRAERTHSPP-XXXXXXXXTSPQRRPALAAPCQGPLTPPH 457
VW+CR + + +PP T+P A AAP + PPH
Sbjct: 57 VWRCRVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPH 99
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 433 PGPADATSPHSPDTCGLALVGPQDQAP 513
PGPA A SPHSP V P P
Sbjct: 70 PGPAAAPSPHSPSPSNAPWVAPAADIP 96
>03_05_0633 + 26276454-26277368
Length = 304
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 668 IRVMEGSWSPVSVIREDRGERGAGGPLLRDGSRRGCRPLQQWKE 799
+ EG+++ V+ E G GG G+RRGCR W+E
Sbjct: 100 LEAAEGAFAATGVLDEGERSLGPGG-----GTRRGCRSSGLWEE 138
>02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608
Length = 375
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -3
Query: 545 QLSGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPGRVYV 405
+ +G A + AW+WGP G C A P A +Y+
Sbjct: 185 RFAGSAEAFDPAAWAWGPVQERVLDEGTCPRTCCAAPAPAAGATMYM 231
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 675 TLMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVP 562
+L RCSST+ + F W S + A R P P P
Sbjct: 118 SLSRCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPP 155
>06_01_0170 - 1352865-1353422,1355049-1355327
Length = 278
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 327 GACGSAGRNGRTARPRPSPR 386
G GSAGR+GR PR +PR
Sbjct: 208 GVDGSAGRSGRRGPPRAAPR 227
>05_07_0100 + 27679280-27680320
Length = 346
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 575 RGAGPRRARDKLRKQVHVKLDNTMKVVEEQRIRVMEGSWS 694
RGA RR + Q ++D K + +R RVM +WS
Sbjct: 81 RGAAARRRPPRTDVQCKNRVDTLKKKYKAERARVMPSTWS 120
>04_01_0200 + 2400929-2402161
Length = 410
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 717 IVESGVQEDPFYVMDLGEVVARYSSGRSSFPGL 815
IV S F+V+DL +VV Y+ R + PG+
Sbjct: 42 IVASSSARSAFHVLDLAKVVDLYAGWRRALPGV 74
>07_01_0040 + 325737-328181
Length = 814
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 249 CTWHKKTDPRLMILFHVFSREK 184
C WHK+ P + +L +VF R K
Sbjct: 504 CCWHKEEKPHVDVLTYVFDRLK 525
>04_03_1022 - 21778315-21779007
Length = 230
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 401 PQRRPALAAPCQGPLTPPHHIH 466
P PA AP GP PPHH H
Sbjct: 71 PPHTPA-PAPAPGPYIPPHHPH 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,121,694
Number of Sequences: 37544
Number of extensions: 625001
Number of successful extensions: 2172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2170
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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