Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_F02
(868 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 32 0.46
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 32 0.46
U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helica... 32 0.61
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 32 0.61
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 32 0.61
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 31 0.81
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 31 0.81
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 31 0.81
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen pro... 30 1.9
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 30 1.9
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 30 2.5
CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical ... 30 2.5
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.3
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.3
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 4.3
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 4.3
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 29 4.3
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 29 4.3
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 5.7
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 29 5.7
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 29 5.7
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.7
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 29 5.7
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 29 5.7
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 29 5.7
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 29 5.7
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 5.7
AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 29 5.7
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 29 5.7
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 5.7
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 28 7.5
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 28 7.5
U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical pr... 28 7.5
U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical pr... 28 7.5
U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical... 28 7.5
AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical... 28 7.5
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 28 7.5
AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative seri... 28 7.5
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 7.5
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 7.5
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical p... 28 9.9
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 28 9.9
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 28 9.9
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 28 9.9
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 28 9.9
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 28 9.9
AC024759-7|AAP13762.1| 483|Caenorhabditis elegans Hypothetical ... 28 9.9
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 28 9.9
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 32.3 bits (70), Expect = 0.46
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 306 LGAPGESGACGSAGRNGRTARPRPS-PR 386
+G PGE G G AGR G RP P+ PR
Sbjct: 176 VGGPGEQGPQGDAGRPGAAGRPGPAGPR 203
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRP 377
G PG G G AG+NG RP P
Sbjct: 231 GNPGAPGNDGEAGKNGNAGRPGP 253
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 32.3 bits (70), Expect = 0.46
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 306 LGAPGESGACGSAGRNGRTARPRPS-PR 386
+G PGE G G AGR G RP P+ PR
Sbjct: 170 VGGPGEQGPQGDAGRPGAAGRPGPAGPR 197
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRP 377
G PG G G AG+NG RP P
Sbjct: 225 GNPGAPGNDGEAGKNGNAGRPGP 247
>U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform b
protein.
Length = 265
Score = 31.9 bits (69), Expect = 0.61
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +3
Query: 237 CAKCN*TTKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSP 383
C CN PP E P G G+ G G+ G+NGR A P+P
Sbjct: 136 CCTCNQGAAGPPGPEGPP------GNDGKDGRNGNDGKNGRDAEVLPAP 178
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 31.9 bits (69), Expect = 0.61
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +3
Query: 237 CAKCN*TTKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSP 383
C CN PP E P G G+ G G+ G+NGR A P+P
Sbjct: 136 CCTCNQGAAGPPGPEGPP------GNDGKDGRNGNDGKNGRDAEVLPAP 178
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 31.9 bits (69), Expect = 0.61
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +3
Query: 237 CAKCN*TTKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSP 383
C CN PP E P G G+ G G+ G+NGR A P+P
Sbjct: 136 CCTCNQGAAGPPGPEGPP------GNDGKDGRNGNDGKNGRDAEVLPAP 178
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 267 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARP 371
PP + P+G GAPG +G G AG NG P
Sbjct: 142 PPPCKPCPAG--PAGAPGPAGPAGDAGANGNPGAP 174
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 267 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARP 371
PP + P+G GAPG +G G AG NG P
Sbjct: 142 PPPCKPCPAG--PAGAPGPAGPAGDAGANGNPGAP 174
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 267 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARP 371
PP + P+G GAPG +G G AG NG P
Sbjct: 142 PPPCKPCPAG--PAGAPGPAGPAGDAGANGNPGAP 174
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 267 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARP 371
PP + P+G GAPG +G G AG NG P
Sbjct: 142 PPPCKPCPAG--PAGAPGPAGPAGDAGANGNPGAP 174
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 267 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARP 371
PP + P+G GAPG +G G AG NG P
Sbjct: 142 PPPCKPCPAG--PAGAPGPAGPAGDAGANGNPGAP 174
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARP 371
G PG SG CG GR G RP
Sbjct: 153 GPPGPSGTCGQVGRPGPDGRP 173
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSPR 386
G GE+GA G AG+NG+ + P P+
Sbjct: 185 GQDGEAGAPGPAGKNGQRGQGAPGPQ 210
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRP 377
G PG+ GA G AG NG P P
Sbjct: 103 GQPGDDGAPGKAGDNGHDGIPSP 125
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 288 PSGWLILGAPGESGA---CGSAGRNGRTARPRPSPRCWRRALNVDPP 419
P+G I GAPGE+G G+AG++G P P+ + +R P
Sbjct: 165 PAG--IDGAPGEAGPQGDAGAAGQDGEAGAPGPAGKNGQRGQGAPGP 209
>Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical
protein T11B7.3b protein.
Length = 273
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSP 383
GAPG+ GA G G +G+ R +P P
Sbjct: 191 GAPGQDGAPGHPGADGQRQRGQPGP 215
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSP 383
GAPG+ GA G G +G+ R +P P
Sbjct: 191 GAPGQDGAPGHPGADGQRQRGQPGP 215
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 237 CAKCN*TTKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRP 377
C KC PP E P+G G+ G+ GA G AG++G P P
Sbjct: 144 CVKCPEGPAGPPGPEG-PAG--PAGSDGQPGAPGDAGKDGPPGPPGP 187
>AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen
protein 71 protein.
Length = 371
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 306 LGAPGESGACGSAGRNGRTARPRPSPR 386
LG GE GA G G N + P P P+
Sbjct: 264 LGKIGEPGATGETGENAENSEPTPGPQ 290
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSP 383
G PG +G G+ G NG RP +P
Sbjct: 184 GRPGPNGKAGANGLNGNPGRPPEAP 208
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +1
Query: 304 FWEHRVSPARVAVPGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPADATSPHSPDT 474
+ + +V+PA A P DA P+ P C PA A +P + D+
Sbjct: 292 YGDEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAATDS 348
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 237 CAKCN*TTKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTAR 368
C KC PP + LP G PG++G G+ G++G R
Sbjct: 137 CIKC---PAGPPGQDGLPGQEGFQGLPGDAGKRGTPGKDGEPGR 177
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARP 371
GAPGE G G G+NG T P
Sbjct: 103 GAPGEPGGTGPDGKNGPTGLP 123
>CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical
protein C52D10.13 protein.
Length = 281
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 168 GMVGKV-FHGKTRETKSLIVGQFFCAKCN*TTKIPPSTESLPSGWLILGAPGESGACGSA 344
G GK +GK + + + FC +C + PP GAPGE G A
Sbjct: 110 GKAGKPGVNGKDADAQQIPTADDFCFECEPSPVGPPGPPGPKGPDGESGAPGEP---GPA 166
Query: 345 GRNGRTARPRPS 380
GR G P P+
Sbjct: 167 GRPGNKGAPGPA 178
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARP-RPSPR 386
G PGE G G AG++GR +P R P+
Sbjct: 210 GEPGEQGPKGEAGQDGRPGQPGRQGPQ 236
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 362 CASVPPGTATRAGLTRCSQNKPP 294
C +V PG R+G RC+ N+PP
Sbjct: 74 CEAVWPGAYCRSGECRCANNQPP 96
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 270 PSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSPR 386
P T S P+G G PG+S S R G PR PR
Sbjct: 349 PPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPR 387
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 270 PSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSPR 386
P T S P+G G PG+S S R G PR PR
Sbjct: 370 PPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPR 408
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 270 PSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSPR 386
P T S P+G G PG+S S R G PR PR
Sbjct: 355 PPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPR 393
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 566 CRFLVTFQLSGLAVSSVVGAWSWGPTSAS-PQVSGECGEVASAGPGTAQPGRVYV 405
C F+++ L + SV+G W +G T V G G +AS TA YV
Sbjct: 113 CDFVMSLSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGRIASTFLITAMSFDRYV 167
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 258 TKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRP 377
T+ PS P G+PGE G G AG GR P P
Sbjct: 201 TRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGP 240
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSP 383
G PGE+G G GR G+ + R +P
Sbjct: 181 GPPGEAGPDGEGGRPGQAGQTRSAP 205
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 258 TKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRP 377
T+ PS P G+PGE G G AG GR P P
Sbjct: 201 TRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGP 240
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSP 383
G PGE+G G GR G+ + R +P
Sbjct: 181 GPPGEAGPDGEGGRPGQAGQTRSAP 205
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSPR 386
GAP SGA GS G+ R P P R
Sbjct: 835 GAPSPSGAAGSNGKQPRYGTPAPPSR 860
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRP 377
G PGE G G +G NGR P P
Sbjct: 154 GPPGEVGPAGPSGDNGRKGPPGP 176
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRP 377
G PGE G G +G NGR P P
Sbjct: 154 GPPGEVGPAGPSGDNGRKGPPGP 176
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSPRCWRR 398
G PGE+G G G G T P P R +R
Sbjct: 172 GTPGEAGTPGPVGEPGETGGPGPQGRPGQR 201
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 270 PSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSP 383
P P + G+PG G G GRNG++ + P P
Sbjct: 458 PGAPGAPGYHGMNGSPGTPGKPGLPGRNGQSCKSIPGP 495
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 267 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARP 371
P SLPS G PGE G G G +GR P
Sbjct: 203 PGQVRSLPSPPGEPGQPGEPGGPGEPGADGRPGHP 237
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRP 377
G PGE GA G G GR P P
Sbjct: 223 GGPGEPGADGRPGHPGRAGPPGP 245
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +3
Query: 237 CAKCN*TTKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRP 377
C KC PP P +G PG G G GR G RP P
Sbjct: 142 CIKC---PAGPPGPRGAPGS---VGEPGPQGRDGMGGRPGNMGRPGP 182
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 344 RAERTHSPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 454
R SPP SPQRRP P P PP
Sbjct: 148 RTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPP 184
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 285 LPSGWLILGAPGESGACGSAGRNG 356
+P + GAPG+ G G GRNG
Sbjct: 173 MPGEQGVTGAPGDKGPAGQPGRNG 196
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 673 SDGGIVVPGQRDPGRSWRAGCRRTPST 753
+DGG+V+P +RD GR + R +P T
Sbjct: 106 NDGGVVIPIRRDIGRDPQYDFRSSPQT 132
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSP 383
GAPGE+GA GS G PR +P
Sbjct: 282 GAPGEAGAPGSGGGCDHCPPPRTAP 306
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSPRCWRRALNVDPP 419
GAPG G GS GR G A+ + +P +A PP
Sbjct: 200 GAPGHPGQAGSPGRPGVDAQSQSNPGAPGQAGPQGPP 236
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARP 371
G PG G CG AGR G P
Sbjct: 217 GLPGPPGPCGEAGREGPNGTP 237
>AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein
107, isoform a protein.
Length = 256
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 309 GAPGESGACGSAGRNG 356
GAPGE G G AG+NG
Sbjct: 101 GAPGEDGTPGQAGKNG 116
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 309 GAPGESGACGSAGRNG 356
GAPGE G G AG+NG
Sbjct: 101 GAPGEDGTPGQAGKNG 116
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRP 377
G PG+ G G+ GRNG P P
Sbjct: 152 GPPGQDGIPGNPGRNGEDGAPGP 174
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 270 PSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPS 380
P+ E P+G GAPG +G G G++G+ +P P+
Sbjct: 134 PAGEPGPAGEA--GAPGPAGPDGQPGQDGQGGQPGPA 168
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARP-RPSPR 386
G PG+ GA G G NGR P P P+
Sbjct: 156 GPPGQPGAPGEQGPNGRPGAPGAPGPQ 182
>U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical
protein M03A1.6b protein.
Length = 753
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 282 SLPSGWLILGAPGESGACGSAGRNGRTARPRPS 380
S PSG G PG S A ++G A PRPS
Sbjct: 10 SRPSGLPSNGNPGSSTTVPPASKSGPVAPPRPS 42
>U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6d protein.
Length = 762
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 282 SLPSGWLILGAPGESGACGSAGRNGRTARPRPS 380
S PSG G PG S A ++G A PRPS
Sbjct: 19 SRPSGLPSNGNPGSSTTVPPASKSGPVAPPRPS 51
>U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6c protein.
Length = 762
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 282 SLPSGWLILGAPGESGACGSAGRNGRTARPRPS 380
S PSG G PG S A ++G A PRPS
Sbjct: 19 SRPSGLPSNGNPGSSTTVPPASKSGPVAPPRPS 51
>AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +1
Query: 343 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 507
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 508 APTTLDTANP 537
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +1
Query: 343 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 507
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 508 APTTLDTANP 537
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 270 PSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPS 380
P+ E P+G GAPG +G G G++G+ +P P+
Sbjct: 134 PAGEPGPAGEA--GAPGPAGPDGQPGQDGQGGQPGPA 168
>AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative
serine-threonine kinasePAR-4 protein.
Length = 617
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +1
Query: 343 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 507
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 508 APTTLDTANP 537
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSP 383
G PG G+ G+ GR G+ +R P P
Sbjct: 182 GQPGHPGSPGNPGRGGQRSRGLPGP 206
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRPSP 383
G PG G+ G+ GR G+ +R P P
Sbjct: 189 GQPGHPGSPGNPGRGGQRSRGLPGP 213
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 27.9 bits (59), Expect = 9.9
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +2
Query: 587 PRRARDKLRKQVHVKLDNTMKVVEEQRI 670
P R RD+++++V ++ + ++ EE+R+
Sbjct: 406 PHRTRDEIKREVQMEYERRWRIEEEERL 433
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARP-RPSPR 386
G PG G G GR G RP +P+P+
Sbjct: 164 GRPGPDGRPGQPGRKGNNGRPGQPAPQ 190
>Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical
protein C39E9.9 protein.
Length = 276
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARPRP 377
G PGE GA G G NG +P P
Sbjct: 89 GPPGEPGAPGDDGWNGDAGQPGP 111
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 309 GAPGESGACGSAGRNGRTARP 371
G PG+ G+ G AG GR RP
Sbjct: 208 GRPGKVGSRGKAGHTGRDGRP 228
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 267 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRP 377
PP LP W G+ G G G AG G P P
Sbjct: 239 PPGDSGLPGPWGPPGSAGMPGEDGYAGTPGEKGWPGP 275
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 294 GWLILGAPGESGACGSAGRNGRTARP-RP 377
G I GAPG SG G GR+G P RP
Sbjct: 101 GCCIPGAPGPSGTPGRHGRHGAPGAPGRP 129
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 267 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRP 377
PP LP W G+ G G G AG G P P
Sbjct: 239 PPGDSGLPGPWGPPGSAGMPGEDGYAGTPGEKGWPGP 275
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +2
Query: 581 AGPRRARDKLRKQVHVKLDNTMKVVEEQRIRVMEGSWSPVSVIREDRGERGAGGPLLRDG 760
A PR++ R+ K EEQ + + + + S R RG RG G R G
Sbjct: 380 AQPRKSLP--RRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGGGN---RRG 434
Query: 761 SRRG 772
SRRG
Sbjct: 435 SRRG 438
>AC024759-7|AAP13762.1| 483|Caenorhabditis elegans Hypothetical
protein Y37E11AR.7 protein.
Length = 483
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 626 VKLDNTMKVVEEQRIRVMEGSWSPVSVIREDRGER 730
V L N+ V E ++ G WS S DRGE+
Sbjct: 219 VTLKNSKFVKENLKVETKAGPWSKCSYCSSDRGEQ 253
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 255 TTKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRP 377
+T P P GAPG+ GA G G+ G++ P P
Sbjct: 202 STPSTPGEPGNPGDAGATGAPGDDGAPGRDGQPGQSGPPGP 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,434,917
Number of Sequences: 27780
Number of extensions: 472683
Number of successful extensions: 2181
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2139
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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