Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_E24
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 0.40
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 0.40
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.0
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 29 4.6
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 29 4.6
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 29 4.6
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 29 6.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.1
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 29 6.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.1
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 8.1
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 8.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.1
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 28 8.1
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect(2) = 0.40
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = -2
Query: 658 PPXPLGXFFXPXLGGGPPXXXXXXXXXXGVFLXGXXPPPPP 536
PP P F P +GG PP + G PPPPP
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPPPGMR-----YPGGMPPPPPP 363
Score = 22.6 bits (46), Expect(2) = 0.40
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -2
Query: 805 GXXXPPPPPXXXVFGGXPG 749
G PPPPP G PG
Sbjct: 304 GMWPPPPPPPPGRTPGPPG 322
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect(2) = 0.40
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = -2
Query: 658 PPXPLGXFFXPXLGGGPPXXXXXXXXXXGVFLXGXXPPPPP 536
PP P F P +GG PP + G PPPPP
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPGMR-----YPGGMPPPPPP 353
Score = 22.6 bits (46), Expect(2) = 0.40
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -2
Query: 805 GXXXPPPPPXXXVFGGXPG 749
G PPPPP G PG
Sbjct: 294 GMWPPPPPPPPGRTPGPPG 312
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 823 GXXGGGGXXXPPPPPXXXVFGGXPGG 746
G GGGG PPP P GG GG
Sbjct: 40 GGCGGGGGCAPPPAPCGGGCGGGGGG 65
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 823 GXXGGGGXXXPPPPPXXXVFGGXPGG 746
G GGGG PPP P GG GG
Sbjct: 64 GGCGGGGGCAPPPAPCGGGCGGGGGG 89
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 823 GXXGGGGXXXPPPPPXXXVFGGXPGG 746
G GGGG PPP P GG GG
Sbjct: 40 GGCGGGGGCAPPPAPCGGGCGGGGGG 65
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 823 GXXGGGGXXXPPPPPXXXVFGGXPGG 746
G GGGG PPP P GG GG
Sbjct: 64 GGCGGGGGCAPPPAPCGGGCGGGGGG 89
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 805 GXXXPPPPPXXXVFGGXPGG 746
G PPPPP FGG GG
Sbjct: 61 GYGAPPPPPPPPAFGGLGGG 80
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 805 GXXXPPPPPXXXVFGGXPGG 746
G PPPPP FGG GG
Sbjct: 61 GYGAPPPPPPPPAFGGLGGG 80
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 805 GXXXPPPPPXXXVFGGXPGG 746
G PPPPP FGG GG
Sbjct: 61 GYGAPPPPPPPPAFGGLGGG 80
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 823 GXXGGGGXXXPPPPPXXXVFGGXPGGXXPLVFWVXP 716
G GG G PPPPP GG G P + P
Sbjct: 22 GGGGGCGCAPPPPPPACGCGGGGGGYAAPPPAYAAP 57
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 829 FFGXXGGGGXXXPPPPP 779
+ G GGGG PPPPP
Sbjct: 29 YSGGGGGGGDAAPPPPP 45
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -2
Query: 658 PPXPLGXFFXPXLGGG--PPXXXXXXXXXXGVFLXGXXPPPPPXXGA 524
PP P G P GG PP + G PPPPP GA
Sbjct: 67 PPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGA 113
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 823 GXXGGGGXXXPPPPPXXXVFGG 758
G G GG PPPP FGG
Sbjct: 225 GGSGAGGAPRPPPPAGPRAFGG 246
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 658 PPXPLGXFFXPXLGGGPPXXXXXXXXXXGVFLXGXXPPPPPXXG 527
PP P G P + GGPP + G PPPPP G
Sbjct: 728 PPPPPGGL--PPITGGPPPPPPPGGLPP---ISGGPPPPPPPPG 766
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 658 PPXPLGXFFXPXLGGGPPXXXXXXXXXXGVFLXGXXPPPPPXXG 527
PP P G P + GGPP + G PPPPP G
Sbjct: 728 PPPPPGGL--PPITGGPPPPPPPGGLPP---ISGGPPPPPPPPG 766
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 811 GGGXXXPPPPPXXXVFGGXPGGXXP 737
GGG PPPP +GG P P
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPPGQP 699
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 811 GGGXXXPPPPPXXXVFGGXPGGXXP 737
GGG PPPP +GG P P
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPPGQP 699
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 658 PPXPLGXFFXPXLGGGPPXXXXXXXXXXGVFLXGXXPPPPPXXG 527
PP P G P + GGPP + G PPPPP G
Sbjct: 311 PPPPPGGL--PPITGGPPPPPPPGGLPP---ISGGPPPPPPPPG 349
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 823 GXXGGGGXXXPPPPP 779
G GGGG PPPPP
Sbjct: 35 GGGGGGGCCAPPPPP 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.307 0.146 0.480
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,642,191
Number of Sequences: 27780
Number of extensions: 135614
Number of successful extensions: 620
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
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