Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_E22
         (1064 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    35   0.022
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    32   0.16 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.7 bits (76), Expect = 0.022
 Identities = 28/92 (30%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
 Frame = -2

Query: 862 GXXGVGFXGGPXVGXPGXXPPLXXPGXSRWGAXCXXXRPXGX--AWPXWAGXVXGGXGGX 689
           G  G GF G    G     PP    G   +G         G    +    G   GG GG 
Sbjct: 184 GHNGGGFGG---FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF 240

Query: 688 GGGGSXXXRXXAXXGFXPGGVGGXE*XXGGDG 593
           GGG           G  PGG GG     GG G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -2

Query: 718 GXVXGGXGGXGGG-GSXXXRXXAXXGFXPGGVGGXE*XXGGDGXXXG 581
           G   GG GG GGG G          GF  GG GG     GG G   G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGF--GGFGGEGHHHGGHGGFGG 228


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 22/70 (31%), Positives = 23/70 (32%)
 Frame = -2

Query: 889 ACPVIPGXXGXXGVGFXGGPXVGXPGXXPPLXXPGXSRWGAXCXXXRPXGXAWPXWAGXV 710
           A P  PG  G  G GF G P  G PG             GA           +    G  
Sbjct: 74  AAPPPPGAEGGPGAGFGGFPGAG-PGGARTFHFNMGGPGGAQFFSASDPNDIFERVFGHA 132

Query: 709 XGGXGGXGGG 680
             G GG GGG
Sbjct: 133 FAGGGGMGGG 142


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
 Frame = +2

Query: 566 TSPGGXXXPTVSPXXSLXPXHPPRXEAXXRTGAXXXRXPAPXXPXAPPHXAG----PXRP 733
           ++P     P++ P  S  P  PP        GA       P  P APP  AG    P  P
Sbjct: 413 STPPVPTPPSLPP--SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470

Query: 734 XGAXGPXXXTXGSPAA 781
             A  P      +PAA
Sbjct: 471 PAAPAPPPAPAPAPAA 486



 Score = 25.4 bits (53), Expect(2) = 1.6
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +3

Query: 861 PXNPGITGQAPAXGRSXPRXARHAPXTEPAXPXPXPXPAXA 983
           P  P +   AP      P     AP   PA P P P PA A
Sbjct: 444 PAAPPLPPSAPI-APPLPAGMPAAPPLPPAAPAPPPAPAPA 483



 Score = 21.4 bits (43), Expect(2) = 1.6
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = +3

Query: 678 PPPPXPP-XPPXTXPAHXGXAXP 743
           PP P PP  PP   P+    A P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPP 437


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 6.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 678 PPPPXPPXP 704
           PPPP PP P
Sbjct: 189 PPPPPPPPP 197



 Score = 21.4 bits (43), Expect(2) = 6.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 681 PPPXPPXPPXTXP 719
           P P PP PP   P
Sbjct: 236 PAPPPPPPPTLPP 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,386
Number of Sequences: 5004
Number of extensions: 19253
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)