Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_E20
(941 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 42 1e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 35 0.014
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.31
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.7
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.1
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 5.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 41.9 bits (94), Expect = 1e-04
Identities = 26/87 (29%), Positives = 29/87 (33%)
Frame = +2
Query: 665 PPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXPXRPPVAPXAXXXX 844
PPLG + PP+PT PP+ PP PP P P PP AP A
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPP-SLPPSAPPSLPMGAP--AAPPLPPSAPIAPPLP 460
Query: 845 XAXPPXXXXPGXRXXXXXFPXPGLVXP 925
P P P P P
Sbjct: 461 AGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/67 (26%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Frame = +2
Query: 683 PQAPXPPLPTXXXXPP--------AXPPXGXPPXGGXXXSAXXPXGGXPXRPPVAPXAXX 838
P P PP PP + PP PP S P G PP P +
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 839 XXXAXPP 859
PP
Sbjct: 371 STGRQPP 377
Score = 26.2 bits (55), Expect = 6.7
Identities = 20/65 (30%), Positives = 22/65 (33%)
Frame = +2
Query: 638 PXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXPXRPP 817
P PP P L A P P+ PP P G P +A P P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAPPLPPAAPAPPPA-PAPAP 484
Query: 818 VAPXA 832
AP A
Sbjct: 485 AAPVA 489
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.1 bits (77), Expect = 0.014
Identities = 22/80 (27%), Positives = 25/80 (31%)
Frame = +2
Query: 635 PPXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXPXRP 814
PP P PP+ AP P P+ P P G PP +A P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV--PKPAAGVPPVPPPSEA 1197
Query: 815 PVAPXAXXXXXAXPPXXXXP 874
P P PP P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAP 1217
Score = 33.1 bits (72), Expect = 0.058
Identities = 29/104 (27%), Positives = 32/104 (30%), Gaps = 5/104 (4%)
Frame = +2
Query: 635 PPXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSA---XXPXGGXP 805
PP P PP+ AP P P+ PP P G PP +A P G P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPS-VAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Query: 806 XRPP--VAPXAXXXXXAXPPXXXXPGXRXXXXXFPXPGLVXPGP 931
P AP PP P P P P P
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPP---VPKPAAGVPPVPPPSEAPPVP 1201
Score = 32.7 bits (71), Expect = 0.077
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Frame = +2
Query: 635 PPXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXP--X 808
PP P PP+ +AP P P+ PP PP PP SA P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPS-VGVPPVPPPSTAPPV--PTPSAGLPPVPVPTAK 1235
Query: 809 RPPV-APXAXXXXXAXP 856
PPV AP + + P
Sbjct: 1236 APPVPAPSSEAPSVSTP 1252
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Frame = +2
Query: 635 PPXXXPPXXXPPLGXXPQAPXPPLP-TXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXPXR 811
PP P PP+ P + PP+P PP PP PP P G P
Sbjct: 1159 PPVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAPP-------VPKPSVGVPPV 1210
Query: 812 PP--VAPXAXXXXXAXPP 859
PP AP PP
Sbjct: 1211 PPPSTAPPVPTPSAGLPP 1228
Score = 31.1 bits (67), Expect = 0.24
Identities = 21/80 (26%), Positives = 24/80 (30%)
Frame = +2
Query: 635 PPXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXPXRP 814
PP PP+ P A PP+P PP P PP G P P
Sbjct: 1012 PPVPKLSSKAPPV-PLPSADAPPIPVPSTAPPVPIPTSTPP-------VPKSSSGAPSAP 1063
Query: 815 PVAPXAXXXXXAXPPXXXXP 874
P P + P P
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAP 1083
Score = 31.1 bits (67), Expect = 0.24
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Frame = +2
Query: 635 PPXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPP-XGXPPXGGXXXSAXXPXGGXPXR 811
PP P PP+ P A PP+P PP P G PP + P
Sbjct: 1169 PPVPAPSSGIPPV-PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Query: 812 PPVAPXA 832
P P A
Sbjct: 1228 PVPVPTA 1234
Score = 29.9 bits (64), Expect = 0.54
Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Frame = +2
Query: 638 PXXXPPXXXPPLGXXPQAPXPPLPTXXXX-PPAXPPXGXPPXGGXXXSA---XXPXGGXP 805
P P PP+ P PP+P PP P G PP +A P G P
Sbjct: 1083 PPVPAPSGIPPV-PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 806 -XRPPVAPXAXXXXXAXPP 859
+P VA PP
Sbjct: 1142 VPKPSVAAPPVPAPSGAPP 1160
Score = 29.5 bits (63), Expect = 0.72
Identities = 21/76 (27%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Frame = +2
Query: 665 PPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXPXRPPV-----APX 829
PP P + P +P PP P G PP +A PPV AP
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 830 AXXXXXAXPPXXXXPG 877
A PP G
Sbjct: 1123 VPKPSVAAPPVPVPSG 1138
Score = 27.1 bits (57), Expect = 3.8
Identities = 26/83 (31%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Frame = +2
Query: 638 PXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXP-PXGXPPXGGXXXSAXXPXGGXPXRP 814
P PP G P AP PP+P P+ P P G PP P G P
Sbjct: 1046 PTSTPPVPKSSSGA-PSAP-PPVPAPSSEIPSIPAPSGAPP-------VPAPSGIPPVPK 1096
Query: 815 P--VAPXAXXXXXAXPPXXXXPG 877
P AP A PP G
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSG 1119
Score = 27.1 bits (57), Expect = 3.8
Identities = 21/91 (23%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Frame = +2
Query: 650 PPXXXPPLGXXPQAPXP----PLPTXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXPXRPP 817
PP P P P P P+P PP P P A P PP
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 818 VAPXAXXXXXAXPPXXXXPGXRXXXXXFPXP 910
V + P P + P P
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Score = 25.8 bits (54), Expect = 8.8
Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Frame = +2
Query: 638 PXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXPXRP- 814
P P PP+ P P P+ P P PP + P P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 815 PV---APXAXXXXXAXPPXXXXPG 877
PV AP A PP G
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSG 1157
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -2
Query: 433 PPPXPPGAXXXGXXXPPPAXPPHXAAXXXGXK 338
PPP PPG G PPP PP A G +
Sbjct: 763 PPPPPPGVAGAG---PPPPPPPPPAVSAGGSR 791
Score = 29.9 bits (64), Expect = 0.54
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +2
Query: 638 PXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSAXXP 790
P PP P +G P P PP PP PP GG A P
Sbjct: 748 PIPVPPPA-PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 433 PPPXPPGAXXXGXXXPPPAXPP 368
PPP PP G PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.1 bits (62), Expect = 0.95
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 635 PPXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXG 763
PP P P P PP P PP PP G G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Frame = +2
Query: 686 QAPXPPLPTXXXXPPAXPPXGXPP----XGGXXXSAXXP--XGGXPXRPPVAPXA 832
++P PP P PA P PP GG P G P PP P A
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 627 VGAPPGXXPPXXXPXXXXXPKPPXPPS 707
+G PP PP P PP PP+
Sbjct: 758 MGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 25.8 bits (54), Expect = 8.8
Identities = 19/74 (25%), Positives = 21/74 (28%)
Frame = +2
Query: 653 PXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGGXXXSAXXPXGGXPXRPPVAPXA 832
P PP P P+P P P PP G + P P PP A A
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPPPAVSA 787
Query: 833 XXXXXAXPPXXXXP 874
P P
Sbjct: 788 GGSRYYAPAPQAEP 801
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +2
Query: 635 PPXXXPPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXP 754
P P PP+ P PP+P PP+ PP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPA---GPPSAPPPPLP 1736
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Frame = +2
Query: 638 PXXXPPXXXPPLGXXPQAPXPPL----PTXXXXPPAXPPXGXPP 757
P P PP P P PP+ P PA PP PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 634 PPXGXPPPXGXPXXXXXPSPXXPPP 708
PP PPP P P PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 636 PPGXXPPXXXPXXXXXPKPPXPPSRP 713
PPG PP P P P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 683 PQAPXPPLPTXXXXPPAXPPXGXPP 757
P P PP P PP+ PP PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 433 PPPXPPGAXXXGXXXPPPAXPP 368
PPP PP PPP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/74 (24%), Positives = 18/74 (24%)
Frame = +3
Query: 636 PPGXXPPXXXPXXXXXPKPPXPPSRPXXXXXXXXXXXXXXXXXXXXXPRXXPXGXXPXAL 815
P P P P PP PP P P A
Sbjct: 174 PSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQAD 233
Query: 816 PLPXPPXXPXXRXP 857
PLP PP P P
Sbjct: 234 PLPAPPPPPPPTLP 247
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -3
Query: 813 GRXGXPPXGXXAEXQXPPXGGXPXGGXAGGXXXXVGRGGXGAWGXXPXGGXXXGGXXXGG 634
G G G PP G GG G GG G +G P G G GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Score = 27.5 bits (58), Expect = 2.9
Identities = 21/64 (32%), Positives = 21/64 (32%)
Frame = -3
Query: 825 GATGGRXGXPPXGXXAEXQXPPXGGXPXGGXAGGXXXXVGRGGXGAWGXXPXGGXXXGGX 646
G GG G PP G P G GG G G GG G GG G
Sbjct: 191 GGFGGGSGGPPPG--------PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
Query: 645 XXGG 634
GG
Sbjct: 243 GPGG 246
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = -1
Query: 755 GGRPXGXXRGGXXXXSGGGXXGLGXXXXXGXPXG-GGXPXG 636
GG P G G G G G G G P G GG P G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 26.2 bits (55), Expect = 6.7
Identities = 25/83 (30%), Positives = 25/83 (30%)
Frame = -3
Query: 939 PPXGPGXTSPGXGXXXXXXRXPGXXXXGGXAXXXXXAXGATGGRXGXPPXGXXAEXQXPP 760
PP GPG G G GG G GG G G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG------ 253
Query: 759 XGGXPXGGXAGGXXXXVGRGGXG 691
GG P GG GG G GG G
Sbjct: 254 FGGGP-GGFGGGPG---GHGGPG 272
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Frame = +2
Query: 650 PPXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXG-GXXXSAXXPXGGXPXRPPVAP 826
PP PP AP P + PA P G P GG P +P P
Sbjct: 58 PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGGYPQQPYYYP 117
Query: 827 XAXXXXXAXP 856
A P
Sbjct: 118 NQPNYYPAQP 127
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +2
Query: 683 PQAPXPPLPTXXXXPP-AXPPXGXPPXGGXXXSAXXPXGGXPXRPPVAPXA 832
P AP PP P PP + PP P + P P + P A
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPA 175
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Frame = +1
Query: 634 PPXGXPPPXGX----PXXXXXPSPXXPPPDXXXXPPRXXPXGRPPXGGXLXFRXXPXXGX 801
PP PP P P P PPP PP P PP L P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP--IPSKAPPIPSSL-----PPPAQ 176
Query: 802 PRXPSRCP 825
P P + P
Sbjct: 177 PAAPVKSP 184
Score = 25.8 bits (54), Expect = 8.8
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Frame = +2
Query: 635 PPXXXPPXXXPPLGXXPQAPXPPLPTXXXX-PPAXPPXGXPPXG-GXXXSAXXPXGGXPX 808
PP PP P + A PP+P+ P + PP P SA P
Sbjct: 139 PPTSAPPR--PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
Query: 809 RPPVAP 826
PP P
Sbjct: 197 MPPKVP 202
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +2
Query: 665 PPLGXXPQAPXPPLPTXXXXPPAXPPXGXP 754
P G P PP+P P A PP P
Sbjct: 158 PGFGNLPNPAMPPIPFLPFNPAAQPPFPPP 187
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 653 PXXXPPLGXXPQAPXPPLPTXXXXPPAXPPXGXPPXGG 766
P PP+ P PT PPA PP G G
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSAL-PPAGPPAGATAISG 1918
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,336
Number of Sequences: 5004
Number of extensions: 29360
Number of successful extensions: 245
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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