Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_E17
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   2.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 773 WAVCTNPPFSPTAAP 817
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 293 EKTSHTSTLNLKHKMNAIVVV 231
           E    T TLNLKH   A++V+
Sbjct: 56  EDAEDTQTLNLKHLRAAVLVL 76


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 612 DTRRFPLEAPSCALLFRPCR 671
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 763 ERPTPN*DTYSVSYEKAPRFPKGERRTVSGKRQGR 659
           ERP    D Y    +  P  P  E R V G  + R
Sbjct: 364 ERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPR 398


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 763 ERPTPN*DTYSVSYEKAPRFPKGERRTVSGKRQGR 659
           ERP    D Y    +  P  P  E R V G  + R
Sbjct: 279 ERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPR 313


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 763 ERPTPN*DTYSVSYEKAPRFPKGERRTVSGKRQGR 659
           ERP    D Y    +  P  P  E R V G  + R
Sbjct: 598 ERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPR 632


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 293 EKTSHTSTLNLKHKM 249
           ++  H+STL++ HKM
Sbjct: 238 DENRHSSTLDIDHKM 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,391
Number of Sequences: 438
Number of extensions: 5346
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)