Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_E16
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    28   1.5  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   4.7  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    27   4.7  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    26   6.2  
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    26   8.2  

>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = +2

Query: 389 TPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPT 568
           TP Q+ +  ++   SL+   I+     + L+P +N  A+ L  ++ +     +P  +   
Sbjct: 64  TPEQSKQMFLYVAHSLQNSGIIDFEFSEELEPIRNAYADSLHNLLSKAFRSTLPMSSTKD 123

Query: 569 ASFSEEYLKPEQLYAST 619
           +  S  Y  P+ + A T
Sbjct: 124 SKKS-RYSSPDGVLAKT 139


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 151  HCSFKFDSFFTKTESHRTLVLKDLHTFIVLRPTLGTVSCLGA*RVNISLXSSRRVQ 318
            H + KFD +  +   +  LVL D+   I  +  +G V   GA +  ++L   R ++
Sbjct: 1221 HGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIE 1276


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 736 CPFFGFFMRINGPCLFFPFW 677
           C + G F+ INGPC  +  W
Sbjct: 239 CMYRGNFVTINGPCTTYMHW 258


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 215 KTCIHSLYSGLLSGQLVVWELKELTFL*XAQEEFNQFYTKWLLKRSPARVGATISE 382
           K  I +++ GL +GQ + + L   T+L     E  + Y   L++    +VG T+S+
Sbjct: 193 KDSISTVHIGLQNGQQLEYPLFVTTWLGFGANEAYRRYLGLLIESENGKVGNTLSD 248


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 132 IQNVKSSRVSQELKAQHVLSERVQENIVPK 43
           ++  K   V QE+K +  LSE  QE+++ K
Sbjct: 99  VEEFKEDNVEQEIKQKRSLSESPQESMLEK 128


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 291 FFXELKKSSINSIQNGCSKDHLPESERRYRNSIHQSKHQKTWF 419
           FF  L +   NSI +  ++  LP   R Y    HQ+K  +T+F
Sbjct: 166 FFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAK-LETYF 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,641,032
Number of Sequences: 5004
Number of extensions: 78409
Number of successful extensions: 265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)