Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_E12
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 323 PPPPXFFXXPPGGGGXXXXPPXPPXFXPPPPP 418
           PPPP      P        PP P    PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +2

Query: 323 PPPPXFFXXPPGGGGXXXXPPXPPXFXPPPPP 418
           PPPP     PPG  G    PP      PPPPP
Sbjct: 761 PPPPP---PPPGVAGAGPPPP------PPPPP 783



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 816 PPPPGGXGXFFXXPLPXPPP 875
           PPPP G       P P PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 323 PPPPXFFXXPPGGGGXXXXPPXPPXFXPPPP 415
           P PP     PP   G    PP PP    PPP
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +1

Query: 280 PXGXXXXKKXXXXXPPPPKXFXKXPXGXGGXXXPPXXPXXXPPPPP 417
           P G           PPPP+         G    PP      PPPPP
Sbjct: 326 PIGNGSSNSSLPPPPPPPRS-----NAAGSIPLPPQGRSAPPPPPP 366


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 323  PPPPXFFXXPPGGGGXXXXPPXPPXFXPPPPP 418
            PPPP     PP        P  PP   PPP P
Sbjct: 1708 PPPPMSVPPPPSA---PPMPAGPPSAPPPPLP 1736


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +2

Query: 350 PPGGGGXXXXPPX--PPXFXPPPPP 418
           PPG       PP   PP   PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 20/82 (24%), Positives = 20/82 (24%), Gaps = 1/82 (1%)
 Frame = +1

Query: 265  PXXXXPXGXXXXKKXXXXXPPPPKXFXKXPXGXGGXXXPP-XXPXXXPPPPPXXFXXXXX 441
            P    P G     K     PP PK     P        PP   P    PP P        
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142

Query: 442  XKXXXXKKXXPXGGXXPPKXXP 507
             K        P     PP   P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKP 1164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,166
Number of Sequences: 5004
Number of extensions: 21308
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)