Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_E09
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   1.2  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   1.5  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   8.2  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    26   8.2  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 555 WSTDYDEYAIAYTCKTLKKKTRTHYVFT-WILTRTKNKLQGDTQKKV 692
           W+   D + +   C TL+K+  T+ +FT WI   +   L  D   K+
Sbjct: 663 WNNFPDGFELKVECITLQKRLDTNLIFTNWINDVSSRNLNFDFDSKI 709


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 260 DTHPVA*TPLPEAPYKEIQSRNNNIVKTSDWYERCRSNGLAPHAV 126
           D + VA   + E   K+       +  T+  Y  CRSNGL PH +
Sbjct: 82  DPNSVAAPKVEEKKSKKKAKDEKPLTYTTGGYLYCRSNGLIPHVM 126


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 285 WIILSFQGYGTTLQAMQAMDGQS 353
           W+   F+ YGT + A   MDGQS
Sbjct: 278 WLGQEFEEYGTIVGARVIMDGQS 300


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 251 PVA*TPLPEAPYKEIQSRNNNIVKTSDWYERCRSNG 144
           P++ TP+ +  YK I S+N ++++    Y    S+G
Sbjct: 789 PLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSG 824


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 612 SSSTFYTCTLWRIHRNQWTKMKNGNCRTLS 523
           + S+  TC LW +HR    ++ NG+ + ++
Sbjct: 480 TGSSDKTCRLWDVHRGHSVRVFNGHTQPVT 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,175
Number of Sequences: 5004
Number of extensions: 66437
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)