Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_E06
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 219 2e-57
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 207 7e-54
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 120 1e-27
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 2e-21
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.039
Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical pr... 30 2.0
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 219 bits (535), Expect = 2e-57
Identities = 101/186 (54%), Positives = 131/186 (70%)
Frame = +1
Query: 223 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 402
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 403 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 582
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 583 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 762
++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 209
Query: 763 SGDRAS 780
D+++
Sbjct: 210 PEDKSA 215
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 800 IKTNFNERYEELRXHWGGGVLGNKSTPASL 889
+ NF+ER+EE+R HWGGGV+ KS L
Sbjct: 223 VNNNFSERHEEIRKHWGGGVMSAKSDAKKL 252
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 207 bits (506), Expect = 7e-54
Identities = 101/186 (54%), Positives = 131/186 (70%)
Frame = +1
Query: 223 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 402
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 403 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 582
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129
Query: 583 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 762
++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 189
Query: 763 SGDRAS 780
D+++
Sbjct: 190 PEDKSA 195
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 800 IKTNFNERYEELRXHWGGGVLGNKSTPASL 889
+ NF+ER+EE+R HWGGGV+ KS L
Sbjct: 203 VNNNFSERHEEIRKHWGGGVMSAKSDAKKL 232
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 120 bits (290), Expect = 1e-27
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +1
Query: 223 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 402
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 403 KTTAKGLFKILEKYRPET 456
+A+ FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 2e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 223 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 402
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +1
Query: 544 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 711
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 541 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-AL 717
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG A+
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 718 VHRK 729
HR+
Sbjct: 128 GHRR 131
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.039
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 498 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 379
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical
protein F28C6.4a protein.
Length = 745
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 24 YRESLRFWAIFAESLVYDLGHVSFRGL 104
++ L W++++ +VYD+ HV F GL
Sbjct: 715 FQNHLFIWSVYSPKVVYDMAHVIFFGL 741
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,201,116
Number of Sequences: 27780
Number of extensions: 351592
Number of successful extensions: 971
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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