Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_E03
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    29   0.66 
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   4.7  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   4.7  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.1  

>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
 Frame = +1

Query: 493 AYTCKTLKKKTRTHYVFTWILTRTK-NKLQGDTQKK-------VETALSNYLELAEHRKQ 648
           AY+ K  +   R H+++ W     +  K   D QK+       VE  L  Y ELA+  K 
Sbjct: 149 AYSTKATRSGIRVHHLYHWAEFEARYRKNVADLQKRYGAFEYDVEAELIRYKELAQRLKP 208

Query: 649 FV 654
           FV
Sbjct: 209 FV 210


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 454 FFILSTDYDEYAIAYTCKTLKKKTRTHYVFTW 549
           FF+ STD  +Y   Y  +   KK   H+   W
Sbjct: 111 FFVTSTDVFKYLDEYERRVRSKKALGHFPVVW 142


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 714 EEIGFELIRVGAVFLGEIFEDELLSVLGQF*VIRKGGLYFLL 589
           EE+G +L +  A F+G + E  + S  GQF ++      F+L
Sbjct: 102 EEVGIDLRKEHAHFVGALDERVITSNWGQFPLLLLSSFVFIL 143


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 194 WIILSFQGYGTTLQAMQAMDGQS 262
           W+   F+ YGT + A   MDGQS
Sbjct: 278 WLGQEFEEYGTIVGARVIMDGQS 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,558
Number of Sequences: 5004
Number of extensions: 66434
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)