Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_E03
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        26   0.53 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        26   0.53 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        26   0.53 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   4.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 232 ASYASDGRPIYDCATLDFQEDNLGYTLRE 318
           A+Y+ D RP YDC TL+  +D+    ++E
Sbjct: 405 AAYSRDVRPKYDC-TLEKSQDDCLKAIKE 432


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 232 ASYASDGRPIYDCATLDFQEDNLGYTLRE 318
           A+Y+ D RP YDC TL+  +D+    ++E
Sbjct: 405 AAYSRDVRPKYDC-TLEKSQDDCLKAIKE 432


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 232 ASYASDGRPIYDCATLDFQEDNLGYTLRE 318
           A+Y+ D RP YDC TL+  +D+    ++E
Sbjct: 405 AAYSRDVRPKYDC-TLEKSQDDCLKAIKE 432


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 785 HNYSLFNHSQVN*SRNNHHQKL 720
           +NY+  N++  N + NN+++KL
Sbjct: 87  NNYNYSNYNNYNNNYNNYNKKL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,867
Number of Sequences: 438
Number of extensions: 5049
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)