Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_E02
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 31 0.21
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 29 0.86
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.6
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.6
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 3.5
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 4.6
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 6.0
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 8.0
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 31.1 bits (67), Expect = 0.21
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 169 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 336
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.86
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 522 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 632
+ +K I L++NN+ KILN R V+ VGT NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 250 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGL 348
K+ +T+ NKL+ ++ + +YAY L LQ L
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQQL 67
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 178 QLYNSVVVADYDSAVEKSKHLYEEKKS 258
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 425 VHKLNRVFGEDKSELNWETIPDDV 354
+H + EDKS+L +ETIPD V
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPV 32
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 507 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 623
K SP+V+WK +W + K K +++ +LG G++
Sbjct: 28 KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 370 VSQLSSDLSSPKTRLSLCTSATV 438
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 244 EEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGLQGTSSGIVSQLSSD--LSSPKTRLS 417
E ++ VI + + L+++ MNC +YA Q W+ G+ I+S +S + S+ + R
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYA-QSWVCRDCGSIISIMSTISMNGVGSASEVRCR 1169
Query: 418 LCTSATVSL 444
C + L
Sbjct: 1170 SCAKPALGL 1178
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 8.0
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 184 YNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNK--MNCMEYAYQLWLQGLQGT 357
+N Y + + + +Y+ EVI V+ +L N + E YQ +++GL
Sbjct: 71 FNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINEQDLETLYEKVYQSFVEGLDAN 130
Query: 358 SSGIVSQLSSDLSSPKTRLSL 420
+GI + + S K +SL
Sbjct: 131 DNGISAYPAGLKPSFKAAMSL 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,728
Number of Sequences: 5004
Number of extensions: 56261
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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