Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_E02
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.9  
U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    29   4.3  
U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    29   4.3  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 205 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 315
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 205 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 315
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 247 EKKSEVITNVVNKLIRNNKMNCMEY---AYQLWLQGLQGTSSGIVSQLSSDLSSPKTRLS 417
           +K  EV TN++N  I    +N ME+    Y  W+  ++ T    + +L + +      L+
Sbjct: 166 KKHFEVGTNIMNLFIGTLCVNAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLA 225

Query: 418 LCTSATVSL 444
            C +   +L
Sbjct: 226 ACVTFLTNL 234


>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 495 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 593
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 495 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 593
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 247 EKKSEVITNVVNKLIRNNKMNCMEY---AYQLWLQGLQGTSSGIVSQLSSDLSSPKTRLS 417
           +K  EV TN++N  I    +N ME+    Y  W+  ++ T    + +L + +      L+
Sbjct: 166 KKHFEVGTNIMNLFIGTLCVNAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLA 225

Query: 418 LCTSATVSL 444
            C +   +L
Sbjct: 226 ACVTFLTNL 234


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 486 AYGDGKDKTSPRVSWKLIALWENNK---VYFKILNTERNQYLVLGVGTNWNGDH 638
           ++G   +   PR  ++ I+ +   +    YF++L+ E N+Y+++    N +G H
Sbjct: 129 SWGPNFNSPKPRQVFRDISTYSYERGIRAYFRVLSAEDNKYILIACHANLHGLH 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,788,305
Number of Sequences: 27780
Number of extensions: 319666
Number of successful extensions: 1003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)