Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_D19
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97009-1|AAC69030.2| 339|Caenorhabditis elegans Serpentine rece... 33 0.20
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 31 1.4
AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical ... 31 1.4
U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical pr... 29 4.3
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 29 4.3
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 4.3
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 4.3
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 4.3
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 29 5.7
Z81102-1|CAB03202.1| 320|Caenorhabditis elegans Hypothetical pr... 29 5.7
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 29 5.7
AC024776-3|AAK68466.1| 453|Caenorhabditis elegans Hypothetical ... 29 5.7
Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U97009-1|AAC69030.2| 339|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 32 protein.
Length = 339
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 610 TLGSDWCW*ILLLVLFQSPLCLLDYRLHLRNLQLSTPRYPVCIL 479
TLG + +L L+ F+SP CL Y + L N ++ Y +C L
Sbjct: 19 TLGIIFNGFLLFLIFFKSPSCLTPYTVFLANTSITQLGYCICFL 62
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 581 NSPAPV*TQSPLSLYPISLQTACPLNHHLKAIPVS 685
N+P+P QSP++L P S+ TA P L +PVS
Sbjct: 2238 NTPSPT-NQSPVTLPPPSVATAGPTGPILTVVPVS 2271
>AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical
protein Y50E8A.10 protein.
Length = 209
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 526 DEAGNPVNTEGSEITPGVEFTSTSLNPESPQSIPNQP-----PDSLPAKPPSEGYPCELS 690
DE N G+ T G T+ S ++ +S+PN P P SL A P+ Y +
Sbjct: 119 DEGENSTQRSGAAETNGPPVTAKSALSKTAKSVPNAPNTSVKPTSLAANSPAPSYTNPGT 178
Query: 691 LSTVSVP 711
+ SVP
Sbjct: 179 PAANSVP 185
>U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical
protein F45E4.3b protein.
Length = 836
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 576 SRIHQHQSEPRVPSVYTQSASRQPA 650
+R HQHQ + + P T SASR P+
Sbjct: 69 TRRHQHQQQHQAPVYITSSASRPPS 93
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
protein F45E4.3a protein.
Length = 1231
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 576 SRIHQHQSEPRVPSVYTQSASRQPA 650
+R HQHQ + + P T SASR P+
Sbjct: 69 TRRHQHQQQHQAPVYITSSASRPPS 93
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 499 GEWTVEGFVDEAGNPVNTEGSEITPGVEFTSTSLNPESPQSIPNQPPDSLPAKPPS-EGY 675
GE G +AG P +E +TPG + P P P P + P PP +G
Sbjct: 197 GEAGQPGPQGDAGTPAQSE--PLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGPPGPKGS 254
Query: 676 P 678
P
Sbjct: 255 P 255
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 532 AGNPVNTEGSEITPGVEF--TSTSLNPESPQSIPNQPPDSLPAKPPSEGYPCELSLSTVS 705
+G+ S ITP + TSTS P S P P ++ A P + G S ST++
Sbjct: 472 SGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTPKSTVTASPSTTGATSTASPSTIT 531
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 499 GEWTVEGFVDEAGNPVNTEGSEITPGVEFTSTSLNPESPQSIPNQPPDSLPAKPPS-EGY 675
GE G +AG P +E +TPG + P P P P + P PP +G
Sbjct: 197 GEAGQPGPQGDAGTPAQSE--PLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGPPGPKGS 254
Query: 676 P 678
P
Sbjct: 255 P 255
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 784 PKFSLCVLVY*TDLRKAAALCIQNQVLRLWIAIAHR 677
PK + +L+ DL KAA L I N L L I I+H+
Sbjct: 726 PKIAAEMLISSGDLDKAALLIIDNDWLELAIEISHK 761
>Z81102-1|CAB03202.1| 320|Caenorhabditis elegans Hypothetical
protein M02B1.3 protein.
Length = 320
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 629 ISLQTACPLNHHLKAIPVSYRYPQSQYLVLYAKGSCFSKISSIYQYTK 772
+S+ T L HH+ +I V S+ +LYA + ++SSI+ +T+
Sbjct: 153 LSISTGVLLFHHVASIYVLSTAVLSKKFLLYAYWAMLMEVSSIFLHTR 200
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 784 PKFSLCVLVY*TDLRKAAALCIQNQVLRLWIAIAHR 677
PK + +L+ DL KAA L I N L L I I+H+
Sbjct: 726 PKIAAEMLISSGDLDKAALLIIDNDWLELAIEISHK 761
>AC024776-3|AAK68466.1| 453|Caenorhabditis elegans Hypothetical
protein Y41D4B.16 protein.
Length = 453
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Frame = +1
Query: 499 GEWTVEGFVDEAGNPVNTEGS----EITPGVEFTSTSLNPESPQSIPNQPPDSLPAKPPS 666
G + V+ F + G P T + TP + T+TS P + +S PP+
Sbjct: 351 GLYYVQYFNMDTGAPTTTSAALSSTASTPSIASTATSAATNPPTTTAGASTNSPATNPPT 410
Query: 667 EGYPCELSLSTVS 705
P S ST S
Sbjct: 411 TSRPITASQSTTS 423
>Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical
protein C04F12.1 protein.
Length = 944
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 568 TPGVEFTSTSLNPESPQSIPNQPPDSLPAKPPSEGYP 678
TP + S S NP +P +I P +P+KP E P
Sbjct: 38 TPELSRVSVSSNPPTPSAIEKPVPLPVPSKPLFEYEP 74
>Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical
protein C34E11.2 protein.
Length = 677
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 553 EGSEI-TPGVEFTSTSLNPESPQSIPNQPPDSLPAKP-PSEGYP 678
EG+ + TP T++ L+P P S PP LP P P+ G P
Sbjct: 472 EGAPVWTPSAVSTASELSPPIPMS---SPPPPLPRTPQPNNGLP 512
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,013,548
Number of Sequences: 27780
Number of extensions: 499216
Number of successful extensions: 1749
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1744
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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